RCC references

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P
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Partensky F, Hoepffner N, Li WKW, Ulloa O, Vaulot D.  1993.  Photoacclimation of Prochlorococcus sp. (Prochlorophyta) strains isolated from the North Atlantic and the Mediterranean Sea. Plant Physiology. 101:295–296.PDF icon Partensky et al_1993_Photoacclimation of Prochlorococcus sp.pdf (1.16 MB)
Santos ALopes dos, Gourvil P, Rodriguez-Hernandez F, Garrido JLuis, Vaulot D.  2016.  Photosynthetic pigments of oceanic Chlorophyta belonging to prasinophytes clade VII. Journal of Phycology. 52:148–155.PDF icon Lopes dos Santos et al_2016_Photosynthetic pigments of oceanic Chlorophyta belonging to prasinophytes clade.pdf (979.53 KB)
Tragin M, Santos ALopes dos, Christen R., Vaulot D..  2016.  Phylogenetic diversity and ecology of green micro algae in marine systems. Perspectives in Phycology. in pressPDF icon Tragin et al_2016_Phylogenetic diversity and ecology of green micro algae in marine systems.pdf (1.94 MB)
Marie D, Simon N, Vaulot D.  2005.  Phytoplankton cell counting by flow cytometry. Algal culturing techniques. :253–267.PDF icon Marie et al_2005_Phytoplankton cell counting by flow cytometry.pdf (518.75 KB)
Treusch AH, Demir-Hilton E, Vergin KL, Worden AZ, Carlson CA, Donatz MG, Burton RM, Giovannoni SJ.  2012.  Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids. The ISME journal. 6:481–492.PDF icon Treusch et al_2012_Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed.pdf (733.67 KB)
Decelle J, Romac S, Stern RF, Bendif EMahdi, Zingone A, Audic S, Guiry MD, Guillou L, Tessier D, Le Gall F et al..  2015.  PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy. Molecular Ecology Resources. 15:1435–1445.PDF icon Decelle et al_2015_PhytoREF.pdf (739.73 KB)
Le Gall F, Rigaut-Jalabert F, Marie D, Garczareck L, Viprey M, Godet A, Vaulot D.  2008.  Picoplankton diversity in the south-east pacific ocean from cultures. Biogeosciences. 5:203–214.
Le Gall F, Rigaut-Jalabert F, Marie D, Garczareck L, Viprey M, Godet A, Vaulot D.  2008.  Picoplankton diversity in the south-east pacific ocean from cultures. Biogeosciences. 5:203–214.
Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.  2013.  pico-PLAZA, a genome database of microbial photosynthetic eukaryotes. Environmental Microbiology. 15:2147–2153.
Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.  2013.  pico-PLAZA, a genome database of microbial photosynthetic eukaryotes. Environmental Microbiology. 15:2147–2153.
Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.  2013.  pico-PLAZA, a genome database of microbial photosynthetic eukaryotes. Environmental Microbiology. 15:2147–2153.
Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.  2013.  pico-PLAZA, a genome database of microbial photosynthetic eukaryotes. Environmental Microbiology. 15:2147–2153.
Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.  2013.  pico-PLAZA, a genome database of microbial photosynthetic eukaryotes. Environmental Microbiology. 15:2147–2153.
Jouenne F, Probert I, Vaulot D.  2008.  Plankton taxonomy in the computer age. Cahiers de Biologie Marine. 49:355–367.PDF icon Jouenne et al_2008_Plankton taxonomy in the computer age.pdf (203.92 KB)
Devic M, Mariac C, Vergé V, Schatt P, Dennu L, Lozano J-C, Bouget F-Y, Sabot F.  2023.  Population dynamics of the cosmopolitan eukaryotic picophytoplankton Bathycoccus during seasonal blooms in the bay of Banyuls sur Mer (North Western Mediterranean sea). PDF icon Devic et al. - 2023 - Population dynamics of the cosmopolitan eukaryotic.pdf (1.73 MB)
Morel A, Ahn Y.-W., Partensky F, Vaulot D, Claustre H.  1993.  Prochlorococcus and Synechococcus: a comparative study of their size, pigmentation and related optical properties. Journal of Marine Research. 51:617–649.PDF icon Morel et al_1993_Prochlorococcus and Synechococcus.pdf (3.66 MB)
Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J et al..  2013.  The protist ribosomal reference database (PR2): a catalog of unicellular eukaryote small SubUnit rRNA sequences with curated taxonomy. Nucleic Acids Research. 41:D597–D604.PDF icon Guillou et al_2013_The protist ribosomal reference database (PR2).pdf (266.2 KB)
Akita S, Vieira C, Hanyuda T, Rousseau F, Cruaud C, Couloux A, Heesch S, J. Cock M, Kawai H.  2022.  Providing a phylogenetic framework for trait-based analyses in brown algae: Phylogenomic tree inferred from 32 nuclear protein-coding sequences. Molecular Phylogenetics and Evolution. 168:107408.
Percopo I, Ruggiero MValeria, Balzano S, Gourvil P, Lundholm N, Siano R, Tammilehto A, Vaulot D, Sarno D.  2016.  Pseudo-nitzschia arctica sp. nov., a new cold-water cryptic Pseudo-nitzschia species within the P. pseudodelicatissima complex. Journal of Phycology. 52:184–199.PDF icon Percopo et al_2016_Pseudo-nitzschia arctica sp.pdf (771.04 KB)
Q
Biegala IC, Not F, Vaulot D, Simon N.  2003.  Quantitative assessment of picoeucaryotes in the natural environment using taxon specific oligonucleotide probes in association with TSA-FISH (Tyramide Signal Amplification - Fluorescent In Situ Hybridization) and flow cytometry. Applied and Environmental Microbiology. 69:5519–5529.PDF icon Biegala et al_2003_Quantitative assessment of picoeucaryotes in the natural environment using.pdf (1.23 MB)
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Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury J-M et al..  2021.  Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp.. BMC Biology. :1–21.PDF icon Farhat et al_2021_Rapid protein evolution, organellar reductions, and invasive intronic elements.pdf (2.01 MB)
Bendif EMahdi, Probert I, Díaz-Rosas F, Thomas D, van den Engh G, Young JR, von Dassow P.  2016.  Recent reticulate evolution in the ecologically dominant lineage of coccolithophores. Frontiers in Microbiology. 7PDF icon Bendif et al_2016_Recent reticulate evolution in the ecologically dominant lineage of.pdf (4.89 MB)
Bendif EMahdi, Probert I, Díaz-Rosas F, Thomas D, van den Engh G, Young JR, von Dassow P.  2016.  Recent reticulate evolution in the ecologically dominant lineage of coccolithophores. Frontiers in Microbiology. 7PDF icon Bendif et al_2016_Recent reticulate evolution in the ecologically dominant lineage of.pdf (4.89 MB)
Cuvelier ML, Guo J, Ortiz AC, van Baren MJ, Tariq MAkram, Partensky F, Worden AZ.  2017.  Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress. PLOS ONE. 12:e0172135.PDF icon Cuvelier et al_2017_Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet.pdf (3.4 MB)

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