RCC references

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Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, E Armbrust V, Eisen JA, Worden AZ.  2012.  Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges. Environmental Microbiology. 14:162–176.PDF icon Monier et al. - Phosphate transporters in marine phytoplankton and their viruses Cross-domain commonalities in viral-host gene exchanges.pdf (4.82 MB)
Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI et al..  2009.  Photosystem I gene cassettes are present in marine virus genomes. Nature. 461:258–262.PDF icon Sharon et al_2009_Photosystem I gene cassettes are present in marine virus genomes.pdf (779.86 KB)
Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI et al..  2009.  Photosystem I gene cassettes are present in marine virus genomes. Nature. 461:258–262.PDF icon Sharon et al_2009_Photosystem I gene cassettes are present in marine virus genomes.pdf (779.86 KB)
Liu F, Gledhill M, Tan Q-G, Zhu K, Zhang Q, Salaün P, Tagliabue A, Zhang Y, Weiss D, Achterberg EP et al..  2022.  Phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation. The ISME Journal. 16:2329–2336.PDF icon Liu et al_2022_Phycosphere pH of unicellular nano- and micro- phytoplankton cells and.pdf (1.5 MB)
Parks M, Nakov T, Ruck E, Wickett NJ, Alverson AJ, Rice AL, Conservation P, Botanic C, Glencoe G.  2017.  Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta). American Journal of Botany. 105:1–18.PDF icon Parks et al_2017_Phylogenomics reveals an extensive history of genome duplication in diatoms.pdf (1.23 MB)
Marie D, Simon N, Vaulot D.  2005.  Phytoplankton cell counting by flow cytometry. Algal culturing techniques. :253–267.PDF icon Marie et al_2005_Phytoplankton cell counting by flow cytometry.pdf (518.75 KB)
Decelle J, Romac S, Stern RF, Bendif EMahdi, Zingone A, Audic S, Guiry MD, Guillou L, Tessier D, Le Gall F et al..  2015.  PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy. Molecular Ecology Resources. 15:1435–1445.PDF icon Decelle et al_2015_PhytoREF.pdf (739.73 KB)
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.  2007.  Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Molecular Biology and Evolution. 24:1832–1842.
Aveiro SS, Melo T, Figueiredo A, Domingues P, Pereira H, Maia IB, Silva J, M. Domingues R, Nunes C, Moreira ASP.  2020.  The polar lipidome of cultured emiliania huxleyi: A source of bioactive lipids with relevance for biotechnological applications. Biomolecules. 10:1434.PDF icon Aveiro et al_2020_The polar lipidome of cultured emiliania huxleyi.pdf (1.72 MB)
Avilan L, Lebrun R, Puppo C, Citerne S, Cuiné S, Li-Beisson Y, Menand B, Field B, Gontero B.  2020.  ppGpp influences protein protection, growth and photosynthesis in Phaeodactylum tricornutum. bioRxiv. :2020.03.05.978130.PDF icon Avilan et al_2020_ppGpp influences protein protection, growth and photosynthesis in Phaeodactylum.pdf (635.67 KB)
Morel A, Ahn Y.-W., Partensky F, Vaulot D, Claustre H.  1993.  Prochlorococcus and Synechococcus: a comparative study of their size, pigmentation and related optical properties. Journal of Marine Research. 51:617–649.PDF icon Morel et al_1993_Prochlorococcus and Synechococcus.pdf (3.66 MB)
Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J et al..  2013.  The protist ribosomal reference database (PR2): a catalog of unicellular eukaryote small SubUnit rRNA sequences with curated taxonomy. Nucleic Acids Research. 41:D597–D604.PDF icon Guillou et al_2013_The protist ribosomal reference database (PR2).pdf (266.2 KB)
Akita S, Vieira C, Hanyuda T, Rousseau F, Cruaud C, Couloux A, Heesch S, J. Cock M, Kawai H.  2022.  Providing a phylogenetic framework for trait-based analyses in brown algae: Phylogenomic tree inferred from 32 nuclear protein-coding sequences. Molecular Phylogenetics and Evolution. 168:107408.
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Bendif EMahdi, Probert I, Archontikis OA, Young JR, Beaufort L, Rickaby RE, Filatov D.  2023.  Rapid diversification underlying the global dominance of a cosmopolitan phytoplankton. The ISME Journal. :1–11.PDF icon Bendif et al_2023_Rapid diversification underlying the global dominance of a cosmopolitan.pdf (2.88 MB)
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury J-M et al..  2021.  Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp.. BMC Biology. :1–21.PDF icon Farhat et al_2021_Rapid protein evolution, organellar reductions, and invasive intronic elements.pdf (2.01 MB)
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury J-M et al..  2021.  Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp.. BMC Biology. :1–21.PDF icon Farhat et al_2021_Rapid protein evolution, organellar reductions, and invasive intronic elements.pdf (2.01 MB)
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury J-M et al..  2021.  Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp.. BMC Biology. :1–21.PDF icon Farhat et al_2021_Rapid protein evolution, organellar reductions, and invasive intronic elements.pdf (2.01 MB)
Andersen RA, Graf L, Malakhov Y, Yoon HSu.  2017.  Rediscovery of the Ochromonas type species Ochromonas triangulata (Chrysophyceae) from its type locality (Lake Veysove, Donetsk region, Ukraine). Phycologia. 56:591–604.PDF icon Andersen et al_2017_Rediscovery of the Ochromonas type species Ochromonas triangulata.pdf (2.99 MB)
Arias AH, Souissi A, Glippa O, Roussin M, Dumoulin D, Net S, Ouddane B, Souissi S.  2017.  Removal and biodegradation of phenanthrene, fluoranthene and pyrene by the marine algae rhodomonas baltica enriched from north atlantic coasts. Bulletin of Environmental Contamination and Toxicology. 98:392–399.
Edvardsen B, Eikrem W, Throndsen J, A. S, Probert I, Medlin L.  2011.  Ribosomal DNA phylogenies and a morphological revision privide the basis for a new taxonomy of Prymnesiales (Haptophyta). European Journal of Phycology. 46:202–228.PDF icon Edvardsen et al_2011_Ribosomal DNA phylogenies and a morphological revision privide the basis for a.pdf (298.42 KB)
Durak GM, Taylor AR, Probert I, de Vargas C, Audic S, Schroeder DC, Brownlee C, Wheeler GL.  2016.  A role for diatom-like silicon transporters in calcifying coccolithophores. Nature Communications. 7:10543.PDF icon Durak et al_2016_A role for diatom-like silicon transporters in calcifying coccolithophores.pdf (1.95 MB)
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Castillo YM, Forn I, Yau S, Morán XAnxelu G, Alonso-Sáez L, Arandia-Gorostidi N, Vaqué D, Sebastián M.  2021.  Seasonal dynamics of natural Ostreococcus viral infection at the single cell level using VirusFISH. Environmental Microbiology. n/aPDF icon Castillo et al_Seasonal dynamics of natural Ostreococcus viral infection at the single cell.pdf (3.15 MB)
Castillo YM, Forn I, Yau S, Morán XAnxelu G, Alonso-Sáez L, Arandia-Gorostidi N, Vaqué D, Sebastián M.  2021.  Seasonal dynamics of natural Ostreococcus viral infection at the single cell level using VirusFISH. Environmental Microbiology. n/aPDF icon Castillo et al_Seasonal dynamics of natural Ostreococcus viral infection at the single cell.pdf (3.15 MB)
Baines SB, Twining BS, Brzezinski Ma., Krause JW, Vogt S, Assael D, McDaniel H.  2012.  Significant silicon accumulation by marine picocyanobacteria. Nature Geoscience. 5:886–891.PDF icon Baines et al_2012_Significant silicon accumulation by marine picocyanobacteria.pdf (635.56 KB)
Vannier T, Leconte J, Seeleuthner Y, Mondy S, Pelletier E, Aury J-M, de Vargas C, Sieracki M, Iudicone D, Vaulot D et al..  2016.  Survey of the green picoalga Bathycoccus genomes in the global ocean. Scientific Reports. 6:37900.PDF icon Vannier et al_2016_Survey of the green picoalga Bathycoccus genomes in the global ocean.pdf (2.44 MB)

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