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RCC2533

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade CRD1a
Strain name: 
Biosope_199-Clonal
Strain name synonyms: 
BIOS-U3-1
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell assemblage: 
chains
Cell shape: 
cylindrical
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling site: 
Chile upwelling
Sampling country: 
Chile
Sampling ecosystem: 
pelagic
Sampling cruise: 
Biosope
Sampling station: 
UPW1
Sampling depth (m): 
5
Sampling date: 
Monday, December 6, 2004
CULTURE CONDITIONS
RCC medium: 
RCC temperature: 
20.00
RCC transfer period weeks: 
3.00
Phenotype pigment: 
Syn type 3d
Remark: 
This is a clonal version of RCC1026. Genome will be sequenced by Genoscope in 2011

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KF177886 CA4-A Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 CA4-A island genomic sequence
KY853968 rmpJ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854577 rpsG Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855073 rpsA1 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014475 apcD Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KF528768 cpeB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY853969 rpsK Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854608 rpsI Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855104 rplS Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L19 (rplS) gene, complete cds
MG014506 apcF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 allophycocyanin beta-18 chain (apcF) gene, complete cds
KF177887 cpeY Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY853970 rpsL Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854639 rplM Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855135 rpsA2 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014535 cpeF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KF177888 mpeY Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 putative phycoerythrobilin:phycoerythrin II lyase (mpeY) gene, complete cds
KY853971 rpsN Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854670 rpsM Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855166 rpsD Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014576 mpeB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF528806 rpcB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY853972 rpsO Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854701 rpsE Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855197 rpsP Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S16 (rpsP) gene, complete cds
KU377986 petB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 cytochrome b6 (petB) gene, complete cds
KY853973 rpsQ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854732 rplF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L6 (rplF) gene, complete cds
KY855228 rpsR Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S18 (rpsR) gene, complete cds
KY853958 rplQ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY853974 rpsS Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854763 rpsH Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855259 rpsB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S2 (rpsB) gene, complete cds
KY853959 rplR Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L18 (rplR) gene, complete cds
KY853975 rpsU Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854794 rplE Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L5 (rplE) gene, complete cds
KY855290 rpsT Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S20 (rpsT) gene, complete cds
KY853960 rplT Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854329 rplO Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854825 rplX Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L24 (rplX) gene, complete cds
KY855321 rpmA Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L27 (rpmA) gene, complete cds
KY853961 rplV Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854360 rpsF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854856 rplN Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L14 (rplN) gene, complete cds
KY855352 ycf65 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY853962 rpmB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854391 rplI Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L9 (rplI) gene, complete cds
KY854887 rplP Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860801 desC3 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY853963 rpmE Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854422 rplK Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L11 (rplK) gene, complete cds
KY854918 rpsC Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860830 desA3 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY853964 rmpF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854453 rplA Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L1 (rplA) gene, complete cds
KY854949 rplB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L2 (rplB) gene, complete cds
KY860852 desA2 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY853965 rmpG Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854484 rplJ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854980 rplW Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L23 (rplW) gene, complete cds
KY860868 desC4 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY853966 rpmH Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854515 rplL Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855011 rplD Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L4 (rplD) gene, complete cds
MG014413 apcA Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 allophycocyanin alpha chain (apcA) gene, complete cds
KY853967 rpmI Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854546 rpsJ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855042 rplC Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L3 (rplC) gene, complete cds
MG014444 ApcB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 allophycocyanin beta chain (apcB) gene, complete cds