RCC2528

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade IIa
Strain name: 
TAK9802-Clonal
Strain name synonyms: 
TKP 7.4, TAK9802
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling site: 
Takapoto atoll
Sampling country: 
France
Sampling ecosystem: 
coastal
Sampling depth (m): 
7
Sampling date: 
Friday, February 6, 1998
Isolation by: 
Le Gall F., Boulben S.
Isolation method: 
filtration
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
80
Phenotype pigment: 
Syn type 3a
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Friday, April 1, 2011
Mother strain: 
RCC262
Sampling by: 
Blanchot J.
Isolation medium: 
f/2
Isolation light: 
16
Deposit to rcc by: 
F. Humily
Purification date: 
Friday, April 1, 2011
Purification by: 
Christophe Six
Purification method: 
Serial platings

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854289 rmpG Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854502 rplJ Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854998 rplW Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L23 (rplW) gene, complete cds
MG014426 ApcB Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 allophycocyanin beta chain (apcB) gene, complete cds
KY854290 rpmH Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854533 rplL Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855029 rplD Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L4 (rplD) gene, complete cds
MG014457 apcD Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854291 rpmI Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854564 rpsJ Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855060 rplC Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L3 (rplC) gene, complete cds
MG014488 apcF Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY854292 rmpJ Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854595 rpsG Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855091 rpsA1 Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014525 cpeF Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KY854293 rpsK Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854626 rpsI Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855122 rplS Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L19 (rplS) gene, complete cds
MG014538 cpeY Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY854294 rpsL Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854657 rplM Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L13 (rplM) gene, complete cds
KY855153 rpsA2 Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014562 mpeB Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF528776 cpeB Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. TAK9802 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854295 rpsN Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854688 rpsM Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855184 rpsD Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014587 mpeY Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KF528814 rpcB Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. TAK9802 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854296 rpsO Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854719 rpsE Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855215 rpsP Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S16 (rpsP) gene, complete cds
CP047937 Genome Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. TAK9802 chromosome, complete genome
KT955725 mpeA Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. TAK9802 C-phycoerythrin class II alpha chain (mpeA) gene, complete cds
KY854297 rpsQ Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854750 rplF Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L6 (rplF) gene, complete cds
KY855246 rpsR Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S18 (rpsR) gene, complete cds
KY854282 rplQ Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854298 rpsS Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854781 rpsH Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855277 rpsB Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S2 (rpsB) gene, complete cds
KY854283 rplR Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L18 (rplR) gene, complete cds
KY854299 rpsU Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854812 rplE Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L5 (rplE) gene, complete cds
KY855308 rpsT Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854284 rplT Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L20 (rplT) gene, complete cds
KY854347 rplO Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L15 (rplO) gene, complete cds
KY854843 rplX Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L24 (rplX) gene, complete cds
KY855339 rpmA Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854285 rplV Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L22 (rplV) gene, complete cds
KY854378 rpsF Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854874 rplN Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L14 (rplN) gene, complete cds
KY855370 ycf65 Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854286 rpmB Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854409 rplI Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L9 (rplI) gene, complete cds
KY854905 rplP Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L16 (rplP) gene, complete cds
KY860819 desC3 Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854287 rpmE Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854440 rplK Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L11 (rplK) gene, complete cds
KY854936 rpsC Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860863 desA2 Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854288 rmpF Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854471 rplA Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L1 (rplA) gene, complete cds
KY854967 rplB Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 50S ribosomal protein L2 (rplB) gene, complete cds
MG014395 apcA Synechococcus sp. TAK9802 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. TAK9802 allophycocyanin alpha chain (apcA) gene, complete cds

Associated references

Displaying 1 - 3 of 3
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.