RCC2527

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade IIa
Strain name: 
A15-44-Clonal
Strain name synonyms: 
A15-48a, A15-44
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling site: 
West Africa upwelling
Sampling country: 
Western Sahara
Sampling ecosystem: 
pelagic
Sampling cruise: 
AMT 15
Sampling station: 
12
Sampling depth (m): 
20
Sampling date: 
Friday, October 1, 2004
Isolation by: 
Zwirglmaier K.
Isolation method: 
enrichment, serial platings
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
80
Phenotype pigment: 
Syn type 2a
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Friday, April 1, 2011
Mother strain: 
RCC1104
Sampling CTD: 
34
Sampling bottle: 
15
Sampling by: 
Zwirglmaier K.
Deposit to rcc by: 
F. Humilly
Purification date: 
Friday, April 1, 2011
Purification by: 
Morgane Ratin
Purification method: 
Serial platings

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY853824 rmpJ Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854569 rpsG Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855065 rpsA1 Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014514 apcF Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY853825 rpsK Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854600 rpsI Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855096 rplS Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L19 (rplS) gene, complete cds
MG014537 cpeF Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KY853826 rpsL Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854631 rplM Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L13 (rplM) gene, complete cds
KY855127 rpsA2 Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014556 cpeY Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KF528782 cpeB Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-44 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY853827 rpsN Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854662 rpsM Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855158 rpsD Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S4 (rpsD) gene, complete cds
CP047938 Genome Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. A15-44 chromosome, complete genome
KF443066 petB Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-44 cytochrome b6 (petB) gene, partial cds
KY853828 rpsO Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854693 rpsE Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855189 rpsP Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S16 (rpsP) gene, complete cds
KF528820 rpcB Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-44 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY853829 rpsQ Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854724 rplF Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L6 (rplF) gene, complete cds
KY855220 rpsR Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S18 (rpsR) gene, complete cds
KY853814 rplQ Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L17 (rplQ) gene, complete cds
KY853830 rpsS Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854755 rpsH Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855251 rpsB Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S2 (rpsB) gene, complete cds
KY853815 rplR Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L18 (rplR) gene, complete cds
KY853831 rpsU Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854786 rplE Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L5 (rplE) gene, complete cds
KY855282 rpsT Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S20 (rpsT) gene, complete cds
KY853816 rplT Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L20 (rplT) gene, complete cds
KY854321 rplO Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L15 (rplO) gene, complete cds
KY854817 rplX Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L24 (rplX) gene, complete cds
KY855313 rpmA Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L27 (rpmA) gene, complete cds
KY853817 rplV Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L22 (rplV) gene, complete cds
KY854352 rpsF Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854848 rplN Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L14 (rplN) gene, complete cds
KY855344 ycf65 Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY853818 rpmB Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854383 rplI Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L9 (rplI) gene, complete cds
KY854879 rplP Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L16 (rplP) gene, complete cds
KY860793 desC3 Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY853819 rpmE Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854414 rplK Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L11 (rplK) gene, complete cds
KY854910 rpsC Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860847 desA2 Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY853820 rmpF Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854445 rplA Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L1 (rplA) gene, complete cds
KY854941 rplB Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L2 (rplB) gene, complete cds
KY860883 desC Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 delta-9 fatty acid desaturase (desC) gene, complete cds
KY853821 rmpG Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854476 rplJ Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854972 rplW Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L23 (rplW) gene, complete cds
MG014421 apcA Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 allophycocyanin alpha chain (apcA) gene, complete cds
KY853822 rpmH Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854507 rplL Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855003 rplD Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L4 (rplD) gene, complete cds
MG014452 ApcB Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 allophycocyanin beta chain (apcB) gene, complete cds
KY853823 rpmI Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854538 rpsJ Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855034 rplC Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 50S ribosomal protein L3 (rplC) gene, complete cds
MG014483 apcD Synechococcus sp. A15-44 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-44 allophycocyanin alpha-B chain (apcD) gene, complete cds

Associated references

Displaying 1 - 3 of 3
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Six C, Ratin M, Marie D, Corre E.  2021.  Marine Synechococcus picocyanobacteria: Light utilization across latitudes. Proceedings of the National Academy of Sciences. 118 PDF icon Download pdf (1.31 MB), PDF icon Download pdf (1.15 MB)