RCC1993

Chaetoceros_neogracilis

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IDENTITY

Chaetoceros_neogracilis

Domain: 
Eukaryota
Division: 
Heterokontophyta
Class: 
Mediophyceae
Order: 
Chaetocerotales
Family: 
Chaetocerotaceae
Genus: 
Chaetoceros
Clade: 
clade IV
Strain name: 
MALINA FT99.3 PG5
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell assemblage: 
chains
Cell shape: 
cylindrical
Length: 
10.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Arctic Ocean
Sampling regional sea: 
Beaufort Sea
Sampling country: 
Canada
Sampling ecosystem: 
pelagic
Sampling cruise: 
MALINA
Sampling station: 
620
Sampling depth (m): 
65
Sampling date: 
Tuesday, August 11, 2009
Isolation by: 
Gourvil P.
Isolation method: 
micropipette
CULTURE CONDITIONS
RCC medium: 
K+Si
RCC temperature: 
4.00
RCC transfer period weeks: 
3.00
RCC light: 
10
Remark: 
Transcriptome sequence is planned in project of Moore Foundation (2013).
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Friday, April 16, 2010
Identification method: 
sequence
Sampling CTD: 
99
Sampling bottle: 
5
Sampling by: 
Vaulot D.
Isolation preculture number: 
FT99.3
Isolation growth temperature: 
4.00
Isolation medium: 
K+Si
Isolation light: 
10
Purification date: 
Saturday, May 15, 2010
Purification by: 
P. Gourvil
Purification method: 
Flow cytometry sorting

Sequences available for this RCC strain

GenBank Accession Gene name Gene location Genome link Genbank organism Genbank taxonomy Description
Transcriptome Link MMETSP1336
JN934668 18S rRNA nucleus Paraphysomonas sp. RCC1993-2 Eukaryota; Stramenopiles; Chrysophyceae; Chromulinales; Paraphysomonadaceae; Paraphysomonas Paraphysomonas sp. RCC1993-2 18S ribosomal RNA gene, partial sequence
JQ995410 28S rRNA nucleus Chaetoceros cf. neogracile Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotophycidae; Chaetocerotales; Chaetocerotaceae; Chaetoceros Chaetoceros cf. neogracile strain RCC1993 28S ribosomal RNA gene, partial sequence
KT860510 ITS rRNA nucleus Chaetoceros cf. neogracilis clade III Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Chaetocerotophycidae; Chaetocerotales; Chaetocerotaceae; Chaetoceros Chaetoceros cf. neogracilis clade III culture RCC:1993 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence

Associated references

Displaying 1 - 1 of 1
Balzano S, Percopo I, Siano R, Gourvil P, Chanoine M, Marie D, Vaulot D, Sarno D.  2017.  Morphological and genetic diversity of Beaufort Sea diatoms with high contributions from the Chaetoceros neogracilis species complex. Journal of Phycology. 53:161–187. PDF icon Download pdf (3.54 MB)