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RCC15

Chloropicon_primus

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No geolocalisation available for this strain.

ABS compliance

ABS = Access & Benefit Sharing according to the Nagoya Protocol to the Convention for Biological Diversity (find out more here)
ABS status: Compliant without conditions
ABS compliance details: No ABS permit needed : sampled pre-NP (no national legislation)
IDENTITY

Chloropicon_primus

Domain: 
Eukaryota
Division: 
Chlorophyta
Class: 
Chloropicophyceae
Order: 
Chloropicales
Family: 
Chloropicaceae
Genus: 
Chloropicon
Genus synonym: 
Clade_VIIA2
Remark: 
Clade_VIIA2
Strain name: 
CCMP1205
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
2.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling regional sea: 
Gulf Stream (East Coast USA)
Sampling country: 
USA
Sampling comment: 
Collection site unknown.
Sampling cruise: 
Trident Cruise Number 26
Sampling date: 
Thursday, July 1, 1965
CULTURE CONDITIONS
RCC medium: 
f/2
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
100
Remark: 
Transcriptome sequence done Moore Foundation (2013).

Sequences available for this RCC strain

GenBank Accession Gene name Gene location Genome link Genbank organism Genbank taxonomy Description
U40921 18S rRNA nucleus Coccoid green alga CCMP1205 nuclear 18S ribosomal RNA gene.
AY702121 16S rRNA plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 16S ribosomal RNA gene, partial sequence; plastid
KT390113 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-48 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390133 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-3-29 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
Transcriptome Link MMETSP1469
FN563080 ITS rRNA plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Chlorophyta sp. CCMP1205 plastid 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), strain CCMP 1205
KT390114 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-44 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390134 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-3-41 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB491623 28S rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 gene for 26S rRNA, partial sequence
HE610139 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain CCMP1205
KT390116 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-42 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390135 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-3-58 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB491624 rbcL plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast rbcL gene for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial cds
KF925345 18S rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 18S ribosomal RNA gene, partial sequence
KT390117 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-41 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390137 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-3-62 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB491625 cox1 mitochondrion prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 mitochondrial cox1 mRNA for cytochrome c oxidase subunit 1, partial cds
KJ746601 Genome plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast, complete genome
KT390119 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-38 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390138 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-3-61 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB491626 Btub nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 Btub gene for beta-tubulin, partial cds
KT390079 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone ZX28-0.2-62 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390120 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-37 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390145 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone ZX14-3-29 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561010 atpA plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast AtpA gene for ATP synthase CF1 alpha subunit, partial cds
KT390080 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone ZX28-0.2-63 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390121 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-32 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561018 atpB plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast AtpB gene for ATP synthase CF1 beta subunit, partial cds
KT390101 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone ZX28-3-61 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390122 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-31 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561026 petD plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast PetD gene for cytochrome b6/f complex subunit IV, partial cds
KT390105 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-66 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390123 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-30 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561034 psaA plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast PsaA gene for photosystem I P700 apoprotein A1, partial cds
KT390106 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-65 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390124 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-26 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561043 psaB plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast PsaB gene for photosystem I P700 apoprotein A2, partial cds
KT390107 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-61 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390125 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-22 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561051 psbA plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast PsbA gene for photosystem II D1 apoprotein, partial cds
KT390108 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-55 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390126 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-18 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561059 psbB plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast PsbB gene for photosystem II CP47 apoprotein, partial cds
KT390109 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-53 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390127 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-15 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561067 psbC plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast psbC gene for photosystem II CP43 apoprotein, partial cds
KT390110 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-52 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390128 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-12 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561075 psbD plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast psbD gene for photosystem II D2 apoprotein, partial cds
KT390111 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390129 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
AB561083 tufA plastid prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 chloroplast TufA gene for translation elongation factor Tu, partial cds
KT390112 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-0.2-50 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT390131 ITS rRNA nucleus prasinophyte sp. CCMP1205 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. CCMP1205 clone KJ34-3-32 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence

Associated references

Displaying 1 - 5 of 5
Leliaert F, Tronholm A, Lemieux C, Turmel M, DePriest MS, Bhattacharya D, Karol KG, Fredericq S, Zechman FW, Lopez-Bautista JM.  2016.  Chloroplast phylogenomic analyses reveal the deepest-branching lineage of the Chlorophyta, Palmophyllophyceae class. nov.. Scientific Reports. 6:25367. PDF icon Download pdf (2.32 MB)
Lopes dos Santos A, Gourvil P, Tragin M, Noël M-H, Decelle J, Romac S, Vaulot D.  2016.  Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. The ISME Journal. in press PDF icon Download pdf (2.6 MB)
Lopes dos Santos A, Gourvil P, Rodriguez-Hernandez F, Garrido JLuis, Vaulot D.  2016.  Photosynthetic pigments of oceanic Chlorophyta belonging to prasinophytes clade VII. Journal of Phycology. 52:148–155. PDF icon Download pdf (979.53 KB)
Lopes dos Santos A, Pollina T, Gourvil P, Corre E, Marie D, Garrido JLuis, Rodríguez F, Noël M-H, Vaulot D, Eikrem W.  2017.  Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Scientific Reports. 7:14019. PDF icon Download pdf (4.58 MB)
Turmel M, Santos ALopes dos, Otis C, Sergerie R, Lemieux C.  2019.  Tracing the Evolution of the Plastome and Mitogenome in the Chloropicophyceae Uncovered Convergent tRNA Gene Losses and a Variant Plastid Genetic Code. Genome Biology and Evolution. in press PDF icon Download pdf (3.28 MB)