RCC references

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Andersen RA, Graf L, Malakhov Y, Yoon HSu.  2017.  Rediscovery of the Ochromonas type species Ochromonas triangulata (Chrysophyceae) from its type locality (Lake Veysove, Donetsk region, Ukraine). Phycologia. 56:591–604.PDF icon Andersen et al_2017_Rediscovery of the Ochromonas type species Ochromonas triangulata.pdf (2.99 MB)
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury J-M et al..  2021.  Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp.. BMC Biology. :1–21.PDF icon Farhat et al_2021_Rapid protein evolution, organellar reductions, and invasive intronic elements.pdf (2.01 MB)
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury J-M et al..  2021.  Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp.. BMC Biology. :1–21.PDF icon Farhat et al_2021_Rapid protein evolution, organellar reductions, and invasive intronic elements.pdf (2.01 MB)
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury J-M et al..  2021.  Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp.. BMC Biology. :1–21.PDF icon Farhat et al_2021_Rapid protein evolution, organellar reductions, and invasive intronic elements.pdf (2.01 MB)
Bendif EMahdi, Probert I, Archontikis OA, Young JR, Beaufort L, Rickaby RE, Filatov D.  2023.  Rapid diversification underlying the global dominance of a cosmopolitan phytoplankton. The ISME Journal. :1–11.PDF icon Bendif et al_2023_Rapid diversification underlying the global dominance of a cosmopolitan.pdf (2.88 MB)
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Akita S, Vieira C, Hanyuda T, Rousseau F, Cruaud C, Couloux A, Heesch S, J. Cock M, Kawai H.  2022.  Providing a phylogenetic framework for trait-based analyses in brown algae: Phylogenomic tree inferred from 32 nuclear protein-coding sequences. Molecular Phylogenetics and Evolution. 168:107408.
Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J et al..  2013.  The protist ribosomal reference database (PR2): a catalog of unicellular eukaryote small SubUnit rRNA sequences with curated taxonomy. Nucleic Acids Research. 41:D597–D604.PDF icon Guillou et al_2013_The protist ribosomal reference database (PR2).pdf (266.2 KB)
Morel A, Ahn Y.-W., Partensky F, Vaulot D, Claustre H.  1993.  Prochlorococcus and Synechococcus: a comparative study of their size, pigmentation and related optical properties. Journal of Marine Research. 51:617–649.PDF icon Morel et al_1993_Prochlorococcus and Synechococcus.pdf (3.66 MB)
Avilan L, Lebrun R, Puppo C, Citerne S, Cuiné S, Li-Beisson Y, Menand B, Field B, Gontero B.  2020.  ppGpp influences protein protection, growth and photosynthesis in Phaeodactylum tricornutum. bioRxiv. :2020.03.05.978130.PDF icon Avilan et al_2020_ppGpp influences protein protection, growth and photosynthesis in Phaeodactylum.pdf (635.67 KB)
Aveiro SS, Melo T, Figueiredo A, Domingues P, Pereira H, Maia IB, Silva J, M. Domingues R, Nunes C, Moreira ASP.  2020.  The polar lipidome of cultured emiliania huxleyi: A source of bioactive lipids with relevance for biotechnological applications. Biomolecules. 10:1434.PDF icon Aveiro et al_2020_The polar lipidome of cultured emiliania huxleyi.pdf (1.72 MB)
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.  2007.  Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Molecular Biology and Evolution. 24:1832–1842.
Decelle J, Romac S, Stern RF, Bendif EMahdi, Zingone A, Audic S, Guiry MD, Guillou L, Tessier D, Le Gall F et al..  2015.  PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy. Molecular Ecology Resources. 15:1435–1445.PDF icon Decelle et al_2015_PhytoREF.pdf (739.73 KB)
Marie D, Simon N, Vaulot D.  2005.  Phytoplankton cell counting by flow cytometry. Algal culturing techniques. :253–267.PDF icon Marie et al_2005_Phytoplankton cell counting by flow cytometry.pdf (518.75 KB)
Parks M, Nakov T, Ruck E, Wickett NJ, Alverson AJ, Rice AL, Conservation P, Botanic C, Glencoe G.  2017.  Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta). American Journal of Botany. 105:1–18.PDF icon Parks et al_2017_Phylogenomics reveals an extensive history of genome duplication in diatoms.pdf (1.23 MB)
Liu F, Gledhill M, Tan Q-G, Zhu K, Zhang Q, Salaün P, Tagliabue A, Zhang Y, Weiss D, Achterberg EP et al..  2022.  Phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation. The ISME Journal. 16:2329–2336.PDF icon Liu et al_2022_Phycosphere pH of unicellular nano- and micro- phytoplankton cells and.pdf (1.5 MB)
Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI et al..  2009.  Photosystem I gene cassettes are present in marine virus genomes. Nature. 461:258–262.PDF icon Sharon et al_2009_Photosystem I gene cassettes are present in marine virus genomes.pdf (779.86 KB)
Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI et al..  2009.  Photosystem I gene cassettes are present in marine virus genomes. Nature. 461:258–262.PDF icon Sharon et al_2009_Photosystem I gene cassettes are present in marine virus genomes.pdf (779.86 KB)
Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, E Armbrust V, Eisen JA, Worden AZ.  2012.  Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges. Environmental Microbiology. 14:162–176.PDF icon Monier et al. - Phosphate transporters in marine phytoplankton and their viruses Cross-domain commonalities in viral-host gene exchanges.pdf (4.82 MB)
Fiore CL, Alexander H, Soule MCKido, Kujawinski EB.  2018.  A phosphate starvation response gene (psr1-like) is present and expressed in Micromonas pusilla and other marine algae. bioRxiv. PDF icon Fiore et al_2018_A phosphate starvation response gene (psr1-like) is present and expressed in.pdf (666.41 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Andersen RA, J. Bailey C, Decelle J, Probert I.  2015.  Phaeocystis rex sp. nov. (Phaeocystales, Prymnesiophyceae): a new solitary species that produces a multilayered scale cell covering. European Journal of Phycology. 50:207–222.PDF icon Andersen et al_2015_Phaeocystis rex sp.pdf (7.99 MB)
Amiraux R, Jeanthon C, Vaultier F, Rontani J-F.  2016.  Paradoxical effects of temperature and solar irradiance on the photodegradation state of killed phytoplankton. Journal of Phycology. 52:475–485.PDF icon Amiraux et al_2016_Paradoxical effects of temperature and solar irradiance on the photodegradation.pdf (976.78 KB)

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