RCC references

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Cho A, Lax G, Keeling PJ.  2024.  Phylogenomic analyses of ochrophytes (stramenopiles) with an emphasis on neglected lineages. Molecular Phylogenetics and Evolution. :108120.PDF icon Cho - EVOLUTION AND DIVERSITY OF STRAMENOPILES.pdf (12.52 MB)
Cho A, Tikhonenkov DV, Lax G, Prokina KI, Keeling PJ.  2023.  Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean. Molecular Phylogenetics and Evolution. :107964.PDF icon Cho et al. - 2023 - Phylogenomic position of genetically diverse phago.pdf (2.71 MB)
Parks M, Nakov T, Ruck E, Wickett NJ, Alverson AJ, Rice AL, Conservation P, Botanic C, Glencoe G.  2017.  Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta). American Journal of Botany. 105:1–18.PDF icon Parks et al_2017_Phylogenomics reveals an extensive history of genome duplication in diatoms.pdf (1.23 MB)
Mackey KRM, Post AF, McIlvin MR, Saito MA.  2017.  Physiological and proteomic characterization of light adaptations in marine Synechococcus. Environmental Microbiology. 19:2348–2365.PDF icon Mackey et al_2017_Physiological and proteomic characterization of light adaptations in marine.pdf (3.51 MB)
Stawiarski B, Buitenhuis ET, Le Quéré C.  2016.  The physiological response of picophytoplankton to temperature and its model representation. Fronitiers in Marine Science. 3:1–13.PDF icon Stawiarski et al_2016_The physiological response of picophytoplankton to temperature and its model.pdf (1.34 MB)
Marie D, Simon N, Vaulot D.  2005.  Phytoplankton cell counting by flow cytometry. Algal culturing techniques. :253–267.PDF icon Marie et al_2005_Phytoplankton cell counting by flow cytometry.pdf (518.75 KB)
Treusch AH, Demir-Hilton E, Vergin KL, Worden AZ, Carlson CA, Donatz MG, Burton RM, Giovannoni SJ.  2012.  Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids. The ISME journal. 6:481–492.PDF icon Treusch et al_2012_Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed.pdf (733.67 KB)
Gebser B, Thume K, Steinke M, Pohnert G.  2020.  Phytoplankton-derived zwitterionic gonyol and dimethylsulfonioacetate interfere with microbial dimethylsulfoniopropionate sulfur cycling. MicrobiologyOpen. :e1014.PDF icon Gebser et al_2020_Phytoplankton-derived zwitterionic gonyol and dimethylsulfonioacetate interfere.pdf (1.24 MB)
Decelle J, Romac S, Stern RF, Bendif EMahdi, Zingone A, Audic S, Guiry MD, Guillou L, Tessier D, Le Gall F et al..  2015.  PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy. Molecular Ecology Resources. 15:1435–1445.PDF icon Decelle et al_2015_PhytoREF.pdf (739.73 KB)
Worden AZ.  2006.  Picoeukaryote diversity in coastal waters of the Pacific Ocean. Aquatic Microbial Ecology. 43:165–175.PDF icon Worden_2006_Picoeukaryote diversity in coastal waters of the Pacific Ocean.pdf (224.04 KB)
Demory D, Baudoux A-claire, Monier A, Simon N, Six C, Ge P, Rigaut-jalabert F, Marie D, Sciandra A, Bernard O et al..  2019.  Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean. The ISME Journal. 13:132–146.PDF icon Demory et al_2019_Picoeukaryotes of the Micromonas genus.pdf (2.51 MB)
Le Gall F, Rigaut-Jalabert F, Marie D, Garczareck L, Viprey M, Godet A, Vaulot D.  2008.  Picoplankton diversity in the south-east pacific ocean from cultures. Biogeosciences. 5:203–214.
Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.  2013.  pico-PLAZA, a genome database of microbial photosynthetic eukaryotes. Environmental Microbiology. 15:2147–2153.
Latasa M, Scharek R, Le Gall F, Guillou L, Le Gall F.  2004.  Pigment suites and taxonomic groups in Prasinophyceae. Journal of Phycology. 40:1149–1155.PDF icon Latasa et al_2004_Pigment suites and taxonomic groups in Prasinophyceae.pdf (32 KB)
Garrido JL, Brunet C, Rodríguez F.  2016.  Pigment variations in Emiliania huxleyi (CCMP370) as a response to changes in light intensity or quality. Environmental Microbiology. 18:4412–4425.PDF icon Garrido et al_2016_Pigment variations in Emiliania huxleyi (CCMP370) as a response to changes in.pdf (1.75 MB)
Jouenne F, Probert I, Vaulot D.  2008.  Plankton taxonomy in the computer age. Cahiers de Biologie Marine. 49:355–367.PDF icon Jouenne et al_2008_Plankton taxonomy in the computer age.pdf (203.92 KB)
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.  2007.  Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Molecular Biology and Evolution. 24:1832–1842.
Klinger CM, Paoli L, Newby RJ, Wang MYu-Wei, Carroll HD, Leblond JD, Howe CJ, Dacks JB, Bowler C, A Cahoon B et al..  2018.  Plastid transcript editing across dinoflagellate lineages shows lineage-specific application but conserved trends. Genome Biology and Evolution. 10:1019–1038.PDF icon Klinger et al_2018_Plastid transcript editing across dinoflagellate lineages shows.pdf (744.63 KB)
Aveiro SS, Melo T, Figueiredo A, Domingues P, Pereira H, Maia IB, Silva J, M. Domingues R, Nunes C, Moreira ASP.  2020.  The polar lipidome of cultured emiliania huxleyi: A source of bioactive lipids with relevance for biotechnological applications. Biomolecules. 10:1434.PDF icon Aveiro et al_2020_The polar lipidome of cultured emiliania huxleyi.pdf (1.72 MB)
Devic M, Mariac C, Vergé V, Schatt P, Dennu L, Lozano J-C, Bouget F-Y, Sabot F.  2023.  Population dynamics of the cosmopolitan eukaryotic picophytoplankton Bathycoccus during seasonal blooms in the bay of Banyuls sur Mer (North Western Mediterranean sea). PDF icon Devic et al. - 2023 - Population dynamics of the cosmopolitan eukaryotic.pdf (1.73 MB)
Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C et al..  2017.  Population genomics of picophytoplankton unveils novel chromosome hypervariability. Science Advances. 3:e1700239.
Avilan L, Lebrun R, Puppo C, Citerne S, Cuiné S, Li-Beisson Y, Menand B, Field B, Gontero B.  2020.  ppGpp influences protein protection, growth and photosynthesis in Phaeodactylum tricornutum. bioRxiv. :2020.03.05.978130.PDF icon Avilan et al_2020_ppGpp influences protein protection, growth and photosynthesis in Phaeodactylum.pdf (635.67 KB)
Derelle E, Yau S, Moreau H, Grimsley NH.  2017.  Prasinovirus attack of ostreococcus is furtive by day but savage by night. Journal of Virology. 92:JVI.01703–17.PDF icon Derelle et al_2017_Prasinovirus attack of ostreococcus is furtive by day but savage by night.pdf (3.92 MB)
Clerissi C, Desdevises Y, Grimsley N.  2012.  Prasinoviruses of the marine green alga Ostreococcus tauri are mainly species specific. Journal of Virology. 86:4611–4619.PDF icon Clerissi et al_2012_Prasinoviruses of the marine green alga Ostreococcus tauri are mainly species.pdf (894.33 KB)
Morel A, Ahn Y.-W., Partensky F, Vaulot D, Claustre H.  1993.  Prochlorococcus and Synechococcus: a comparative study of their size, pigmentation and related optical properties. Journal of Marine Research. 51:617–649.PDF icon Morel et al_1993_Prochlorococcus and Synechococcus.pdf (3.66 MB)

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