RCC80

Nitzschia_sp

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IDENTITY

Nitzschia_sp

Domain: 
Eukaryota
Division: 
Heterokontophyta
Class: 
Bacillariophyceae
Order: 
Bacillariales
Family: 
Bacillariaceae
Genus: 
Nitzschia
Strain name: 
ROS97004
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
elongated
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling regional sea: 
English Channel
Sampling site: 
Britanny coast
Sampling country: 
France
Sampling ecosystem: 
coastal
Sampling station: 
Roscoff Estacade
Sampling depth (m): 
0
Sampling date: 
Sunday, June 1, 1997
Isolation by: 
Ning X.R.
CULTURE CONDITIONS
RCC medium: 
K+Si
RCC temperature: 
20.00
RCC transfer period weeks: 
3.00
RCC light: 
100
Remark: 
This strain was until Feb 2011 misidentified as Navicula transitans.
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Sunday, November 1, 1998
Identification by: 
D. Sarno
Sampling by: 
Ning X.R.
Isolation growth temperature: 
15.00
Isolation medium: 
f/2
Deposit to RCC date: 
Sunday, June 1, 1997
Deposit to rcc by: 
Ning

Sequences available for this RCC strain

GenBank Accession Gene name Gene location Genome link Genbank organism Genbank taxonomy Description
LN735464 16S rRNA plastid Nitzschia sp. RCC80 Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia; unclassified Nitzschia Nitzschia sp. RCC80 chloroplast partial 16S rRNA gene, strain RCC 80
KT861227 18S rRNA nucleus Nitzschia sp. RCC80 Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia; unclassified Nitzschia Nitzschia sp. RCC80 isolate ZZ0045216 18S ribosomal RNA gene, partial sequence
Transcriptome Link MMETSP0014

Associated references

Displaying 1 - 7 of 7
van Tol HM, Amin SA, E Armbrust V.  2017.  Ubiquitous marine bacterium inhibits diatom cell division. The ISME Journal. 11:31–42.
Barton S, Jenkins J, Buckling A, Schaum C.-E, Smirnoff N, Raven JA, Yvon-Durocher G.  2020.  Evolutionary temperature compensation of carbon fixation in marine phytoplankton. Ecology Letters. :ele.13469.
Bestion E, Barton S, García FC, Warfield R, Yvon-Durocher G.  2020.  Abrupt declines in marine phytoplankton production driven by warming and biodiversity loss in a microcosm experiment. Ecology Letters. 23:457–466. PDF icon Download pdf (1.26 MB)
van Tol HM.  2019.  Computational and experimental models of diatom-bacteria interaction. PDF icon Download pdf (848.2 KB)
Parks M, Nakov T, Ruck E, Wickett NJ, Alverson AJ, Rice AL, Conservation P, Botanic C, Glencoe G.  2017.  Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta). American Journal of Botany. 105:1–18. PDF icon Download pdf (1.23 MB)
Arsenieff L, Simon N, Rigaut-jalabert F, Le Gall F, Chaffron S, Corre E, Com E, Bigeard E, Baudoux A-claire.  2019.  First viruses infecting the marine diatom guinardia delicatula. Frontiers in Microbiology. 9 PDF icon Download pdf (2.22 MB)
Connell PE, Ribalet F, Armbrust EV, White A, Caron DA.  2020.  Diel oscillations in the feeding activity of heterotrophic and mixotrophic nanoplankton in the North Pacific Subtropical Gyre. Aquatic Microbial Ecology. 85:167–181. PDF icon Download pdf (1.35 MB)