RCC75

Skeletonema_marinoi

Distributed

Print

NB: Empty fields are hidden.

Please login or register to order strains

Login

Register

No geolocalisation available for this strain.

ABS compliance

Are users allowed to use this biological resource without applying for formal ABS authorization?
Yes - (D) No information on country of origin, resource sampled pre-NP
Remarks:
Origin not known, but sampled prior to 1998 (deposit date in RCC).
ABS = Access & Benefit Sharing according to the Nagoya Protocol (NP) to the Convention for Biological Diversity (find out more here)
ABS Clearing House EMBRC step by step guide
IDENTITY

Skeletonema_marinoi

Domain: 
Eukaryota
Division: 
Heterokontophyta
Class: 
Mediophyceae
Order: 
Thalassiosirales
Family: 
Skeletonemataceae
Genus: 
Skeletonema
Strain name: 
Caen
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell assemblage: 
chains
Cell shape: 
rectangular
Length: 
6.00
CULTURE CONDITIONS
RCC medium: 
K+Si
RCC temperature: 
20.00
RCC transfer period weeks: 
3.00
RCC light: 
100
Remark: 
Probably equivalent to AC174 (Algobank Caen collection) isolated from Normandy (France) in 1987. 2022-03-02 Species named changed to S. marinoi from S. cf costatum based on genome.
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Sunday, November 1, 1998
Identification method: 
sequence
Deposit to RCC date: 
Tuesday, March 3, 1998
Deposit to rcc by: 
Ecloserie Satmar (50760 Gratteville Phare)

Sequences available for this RCC strain

GenBank Accession Gene name Gene location Genbank organism Genbank taxonomy Description
KT860967 18S rRNA nucleus Skeletonema cf. costatum Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Skeletonemataceae; Skeletonema Skeletonema cf. costatum strain RCC75 isolate ZZ0045278 18S ribosomal RNA gene, partial sequence
PRJNA647329 Genome Skeletonema costaturm

Associated references

Displaying 1 - 7 of 7
Gebser B, Thume K, Steinke M, Pohnert G.  2020.  Phytoplankton-derived zwitterionic gonyol and dimethylsulfonioacetate interfere with microbial dimethylsulfoniopropionate sulfur cycling. MicrobiologyOpen. :e1014. PDF icon Download pdf (1.24 MB)
Kuhlisch C, Deicke M, Ueberschaar N, Wichard T, Pohnert G.  2017.  A fast and direct liquid chromatography-mass spectrometry method to detect and quantify polyunsaturated aldehydes and polar oxylipins in diatoms. Limnology and Oceanography: Methods. 15:70–79. PDF icon Download pdf (311.11 KB)
Stettin D, Poulin RX, Pohnert G.  2020.  Metabolomics benefits from orbitrap GC–MS—Comparison of low- and high-resolution GC–MS. Metabolites. 10:143. PDF icon Download pdf (1.6 MB)
Sorokina M, Barth E, Zulfiqar M, Kwantes M, Pohnert G, Steinbeck C.  2022.  Draft genome assembly and sequencing dataset of the marine diatom Skeletonema costatum RCC75. Data in Brief. :107931. PDF icon Download pdf (521.08 KB)
Nikitashina V, Stettin D, Pohnert G.  2022.  Metabolic adaptation of diatoms to hypersalinity. Phytochemistry. :113267. PDF icon Download pdf (1.63 MB)
Meyer N, Rydzyk A, Pohnert G.  2022.  Pronounced Uptake and Metabolism of Organic Substrates by Diatoms Revealed by Pulse-Labeling Metabolomics. Frontiers in Marine Science. 9:821167. PDF icon Download pdf (3.81 MB)
Syhapanha KS, Russo DA, Deng Y, Meyer N, Poulin RX, Pohnert G.  2023.  Transcriptomics‐guided identification of an algicidal protease of the marine bacterium Kordia algicida OT‐1. MicrobiologyOpen. 12:e1387. PDF icon Download pdf (2.09 MB)