RCC791

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade IIa
Strain name: 
M16.1
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling regional sea: 
Gulf of Mexico
Sampling country: 
USA
Sampling ecosystem: 
pelagic
Sampling depth (m): 
275
Sampling date: 
Monday, February 9, 2004
Isolation by: 
Everroad C.
Isolation method: 
Agar plating
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
80
Phenotype pigment: 
Syn type 3a
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Wednesday, February 2, 2005
Isolation growth temperature: 
24.00
Isolation medium: 
f/2
Deposit to RCC date: 
Thursday, November 4, 2004
Deposit to rcc by: 
C. Everroad

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854022 rmpJ Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854580 rpsG Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855076 rpsA1 Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014533 cpeF Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
JF307548 petB M16.1
KY854023 rpsK Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854611 rpsI Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855107 rplS Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L19 (rplS) gene, complete cds
MG014548 cpeY Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KF528774 cpeB Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. M16.1 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854024 rpsL Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854642 rplM Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855138 rpsA2 Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014574 mpeB Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF528812 rpcB Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. M16.1 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854025 rpsN Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854673 rpsM Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855169 rpsD Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014596 mpeY Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KT955731 mpeA Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. M16.1 C-phycoerythrin class II alpha chain (mpeA) gene, complete cds
KY854026 rpsO Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854704 rpsE Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855200 rpsP Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S16 (rpsP) gene, complete cds
CP047954 Genome Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. M16.1 chromosome, complete genome
KT955721 mpeB Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. M16.1 C-phycoerythrin class II beta chain (mpeB) gene, complete cds
KY854027 rpsQ Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854735 rplF Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L6 (rplF) gene, complete cds
KY855231 rpsR Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S18 (rpsR) gene, complete cds
KY854012 rplQ Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854028 rpsS Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854766 rpsH Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855262 rpsB Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S2 (rpsB) gene, complete cds
KY854013 rplR Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L18 (rplR) gene, complete cds
KY854029 rpsU Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854797 rplE Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L5 (rplE) gene, complete cds
KY855293 rpsT Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854014 rplT Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854332 rplO Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854828 rplX Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L24 (rplX) gene, complete cds
KY855324 rpmA Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854015 rplV Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854363 rpsF Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854859 rplN Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L14 (rplN) gene, complete cds
KY855355 ycf65 Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854016 rpmB Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854394 rplI Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L9 (rplI) gene, complete cds
KY854890 rplP Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860804 desC3 Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854017 rpmE Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854425 rplK Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L11 (rplK) gene, complete cds
KY854921 rpsC Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860855 desA2 Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854018 rmpF Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854456 rplA Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L1 (rplA) gene, complete cds
KY854952 rplB Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L2 (rplB) gene, complete cds
MG014410 apcA Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 allophycocyanin alpha chain (apcA) gene, complete cds
KY854019 rmpG Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854487 rplJ Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854983 rplW Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L23 (rplW) gene, complete cds
MG014441 ApcB Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 allophycocyanin beta chain (apcB) gene, complete cds
KY854020 rpmH Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854518 rplL Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855014 rplD Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L4 (rplD) gene, complete cds
MG014472 apcD Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854021 rpmI Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854549 rpsJ Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855045 rplC Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 50S ribosomal protein L3 (rplC) gene, complete cds
MG014503 apcF Synechococcus sp. M16.1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. M16.1 allophycocyanin beta-18 chain (apcF) gene, complete cds

Associated references

Displaying 1 - 7 of 7
Pittera J, Partensky F, Six C.  2017.  Adaptive thermostability of light-harvesting complexes in marine picocyanobacteria. The ISME Journal. 11:112–124. PDF icon Download pdf (2.07 MB)
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.
Six C, Ratin M, Marie D, Corre E.  2021.  Marine Synechococcus picocyanobacteria: Light utilization across latitudes. Proceedings of the National Academy of Sciences. 118 PDF icon Download pdf (1.31 MB), PDF icon Download pdf (1.15 MB)
Ferrieux M, Dufour L, Doré H, Ratin M, Guéneuguès A, Chasselin L, Marie D, Rigaut-jalabert F, Le Gall F, Sciandra T et al..  2022.  Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas. Frontiers in Microbiology. 13 PDF icon Download pdf (2.17 MB)
Doré H, Leconte J, Guyet U, Breton S, Farrant GK, Demory D, Ratin M, Hoebeke M, Corre E, Pitt FD et al..  2022.  Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts. mSystems. :e00656–22. PDF icon Download pdf (1.87 MB)