RCC2571

Synechococcus_sp

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Yes - (D) No information on country of origin, resource sampled pre-NP
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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade CRD1
Strain name: 
MITS 9220 clonal
Strain name synonyms: 
MITS9220
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling regional sea: 
Equatorial Pacific
Sampling ecosystem: 
pelagic
Sampling depth (m): 
0
Sampling date: 
Thursday, October 1, 1992
Isolation by: 
Blinder B.
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
20
Phenotype pigment: 
Syn type 3dA
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Thursday, November 3, 2011
Deposit to rcc by: 
D. Scanlan
Purification date: 
Saturday, October 1, 2011
Purification by: 
Martin Oftrowski (Warwick)
Purification method: 
Serial platings

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854067 rplR Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L18 (rplR) gene, complete cds
KY854083 rpsU Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854800 rplE Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L5 (rplE) gene, complete cds
KY855296 rpsT Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S20 (rpsT) gene, complete cds
MG014605 mpeZ Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 phycoerythrobilin:Cys-83 alpha-phycoerythrin II lyase-isomerase (mpeZ) gene, complete cds
KY854068 rplT Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L20 (rplT) gene, complete cds
KY854335 rplO Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L15 (rplO) gene, complete cds
KY854831 rplX Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L24 (rplX) gene, complete cds
KY855327 rpmA Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L27 (rpmA) gene, complete cds
MG018774 cpeB Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 C-phycoerythrin class I beta subunit (cpeB) and C-phycoerythrin class I alpha subunit (cpeA) genes, complete cds
KY854069 rplV Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L22 (rplV) gene, complete cds
KY854366 rpsF Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854862 rplN Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L14 (rplN) gene, complete cds
KY855358 ycf65 Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 ribosomal protein Ycf65 (ycf65) gene, complete cds
CP047958 Genome Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. MIT S9220 chromosome, complete genome
KY854070 rpmB Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854397 rplI Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L9 (rplI) gene, complete cds
KY854893 rplP Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L16 (rplP) gene, complete cds
KY860807 desC3 Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854071 rpmE Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854428 rplK Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L11 (rplK) gene, complete cds
KY854924 rpsC Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860835 desA3 Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854072 rmpF Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854459 rplA Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L1 (rplA) gene, complete cds
KY854955 rplB Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L2 (rplB) gene, complete cds
KY860872 desC4 Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY854073 rmpG Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854490 rplJ Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854986 rplW Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L23 (rplW) gene, complete cds
MG014407 apcA Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 allophycocyanin alpha chain (apcA) gene, complete cds
KY854074 rpmH Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854521 rplL Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855017 rplD Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L4 (rplD) gene, complete cds
MG014438 ApcB Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 allophycocyanin beta chain (apcB) gene, complete cds
KY854075 rpmI Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854552 rpsJ Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855048 rplC Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L3 (rplC) gene, complete cds
MG014469 apcD Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854076 rmpJ Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854583 rpsG Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855079 rpsA1 Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014500 apcF Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY854077 rpsK Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854614 rpsI Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855110 rplS Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L19 (rplS) gene, complete cds
MG014520 cpcB Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 phycocyanin beta chain (cpcB) and phycocyanin alpha chain (cpcA) genes, complete cds
KY854078 rpsL Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854645 rplM Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L13 (rplM) gene, complete cds
KY855141 rpsA2 Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014532 cpeF Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KY854079 rpsN Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854676 rpsM Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855172 rpsD Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014546 cpeY Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY854080 rpsO Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854707 rpsE Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855203 rpsP Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S16 (rpsP) gene, complete cds
MG014560 fciA Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 putative AraC-type helix-turn-helix DNA-binding domain-containing transcriptional regulator (fciA) and putative AraC-type helix-turn-helix DNA-binding domain-containing transcriptional regulator (fciB) genes, complete cds
KY854081 rpsQ Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854738 rplF Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L6 (rplF) gene, complete cds
KY855234 rpsR Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S18 (rpsR) gene, complete cds
MG014571 mpeB Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KY854066 rplQ Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854082 rpsS Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854769 rpsH Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855265 rpsB Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 30S ribosomal protein S2 (rpsB) gene, complete cds
MG014594 mpeY Synechococcus sp. MIT S9220 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MIT S9220 isolate MITS9220 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds

Associated references

Displaying 1 - 6 of 6
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.
B. Belisle S, Paz AAAvila, Carpenter AR, Cormier TC, Lewis AJ, Menin LS, Oliveira DR, Song B, Szeto A, Tchantouridze EI et al..  2020.  Genome sequences of synechococcus sp. Strain MIT S9220 and cocultured cyanophage SynMITS9220M01. Microbiology Resource Announcements. 9:28–30. PDF icon Download pdf (547.86 KB)
Ferrieux M, Dufour L, Doré H, Ratin M, Guéneuguès A, Chasselin L, Marie D, Rigaut-jalabert F, Le Gall F, Sciandra T et al..  2022.  Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas. Frontiers in Microbiology. 13 PDF icon Download pdf (2.17 MB)
Dufour L, Garczarek L, Gouriou B, Clairet J, Ratin M, Partensky F.  2024.  Differential acclimation kinetics of the two forms of type IV chromatic acclimaters occurring in marine Synechococcus cyanobacteria. Frontiers in Microbiology. 15:1349322. PDF icon Download pdf (2.03 MB)