RCC2556

Synechococcus_sp

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Are users allowed to use this biological resource without applying for formal ABS authorization?
Yes - (D) No information on country of origin, resource sampled pre-NP
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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade IIIb
Strain name: 
A15-28 Clonal
Strain name synonyms: 
A15-28
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling regional sea: 
North Atlantic
Sampling ecosystem: 
pelagic
Sampling cruise: 
AMT 15
Sampling station: 
8
Sampling depth (m): 
15
Sampling date: 
Saturday, September 25, 2004
Isolation by: 
Zwirglmaier K.
Isolation method: 
enrichment, serial platings
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
20
Phenotype pigment: 
Syn type 3c
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Monday, July 18, 2011
Mother strain: 
RCC1103
Sampling CTD: 
21
Sampling bottle: 
19
Sampling by: 
Zwirglmaier K.
Deposit to RCC date: 
Friday, June 15, 2007
Deposit to rcc by: 
F. Humily
Purification date: 
Monday, July 18, 2011
Purification by: 
Warwick
Purification method: 
Serial platings

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KT955724 mpeB Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-28 C-phycoerythrin class II beta chain (mpeB) gene, complete cds
KY853811 rpsQ Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854723 rplF Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L6 (rplF) gene, complete cds
KY855219 rpsR Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S18 (rpsR) gene, complete cds
KY853796 rplQ Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L17 (rplQ) gene, complete cds
KY853812 rpsS Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854754 rpsH Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855250 rpsB Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S2 (rpsB) gene, complete cds
KY853797 rplR Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L18 (rplR) gene, complete cds
KY853813 rpsU Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854785 rplE Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L5 (rplE) gene, complete cds
KY855281 rpsT Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S20 (rpsT) gene, complete cds
KY853798 rplT Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L20 (rplT) gene, complete cds
KY854320 rplO Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L15 (rplO) gene, complete cds
KY854816 rplX Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L24 (rplX) gene, complete cds
KY855312 rpmA Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L27 (rpmA) gene, complete cds
KY853799 rplV Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L22 (rplV) gene, complete cds
KY854351 rpsF Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854847 rplN Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L14 (rplN) gene, complete cds
KY855343 ycf65 Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY853800 rpmB Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854382 rplI Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L9 (rplI) gene, complete cds
KY854878 rplP Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L16 (rplP) gene, complete cds
KY860792 desC3 Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY853801 rpmE Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854413 rplK Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L11 (rplK) gene, complete cds
KY854909 rpsC Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860823 desA3 Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY853802 rmpF Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854444 rplA Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L1 (rplA) gene, complete cds
KY854940 rplB Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L2 (rplB) gene, complete cds
KY860846 desA2 Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY853803 rmpG Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854475 rplJ Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854971 rplW Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L23 (rplW) gene, complete cds
MG014422 apcA Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 allophycocyanin alpha chain (apcA) gene, complete cds
KY853804 rpmH Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854506 rplL Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855002 rplD Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L4 (rplD) gene, complete cds
MG014453 ApcB Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 allophycocyanin beta chain (apcB) gene, complete cds
KY853805 rpmI Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854537 rpsJ Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855033 rplC Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L3 (rplC) gene, complete cds
MG014484 apcD Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY853806 rmpJ Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854568 rpsG Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855064 rpsA1 Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014515 apcF Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY853807 rpsK Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854599 rpsI Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855095 rplS Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L19 (rplS) gene, complete cds
MG014557 cpeY Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KF528773 cpeB Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-28 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY853808 rpsL Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854630 rplM Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 50S ribosomal protein L13 (rplM) gene, complete cds
KY855126 rpsA2 Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014584 mpeB Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF528811 rpcB Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-28 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY853809 rpsN Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854661 rpsM Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855157 rpsD Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014603 mpeY Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KT955734 mpeA Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-28 C-phycoerythrin class II alpha chain (mpeA) gene, complete cds
KY853810 rpsO Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854692 rpsE Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855188 rpsP Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-28 30S ribosomal protein S16 (rpsP) gene, complete cds
CP047931 Genome Synechococcus sp. A15-28 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. A15-28 chromosome, complete genome

Associated references

Displaying 1 - 3 of 3
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Doré H, Leconte J, Guyet U, Breton S, Farrant GK, Demory D, Ratin M, Hoebeke M, Corre E, Pitt FD et al..  2022.  Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts. mSystems. :e00656–22. PDF icon Download pdf (1.87 MB)