RCC2554

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade VII
Strain name: 
A15-60 Clonal
Strain name synonyms: 
A15-60
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling country: 
Cap Verde
Sampling ecosystem: 
pelagic
Sampling cruise: 
AMT 15
Sampling station: 
15
Sampling depth (m): 
10
Sampling date: 
Monday, October 4, 2004
Isolation by: 
Zwirglmaier K.
Isolation method: 
enrichment, serial platings
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
20
Phenotype pigment: 
Syn type 3c
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Monday, July 18, 2011
Mother strain: 
RCC1092
Sampling CTD: 
44
Sampling bottle: 
19
Sampling by: 
Zwirglmaier K.
Deposit to RCC date: 
Friday, June 15, 2007
Deposit to rcc by: 
F. Humily
Purification date: 
Monday, July 18, 2011
Purification by: 
Warwick
Purification method: 
Serial platings

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY853845 rpsN Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854663 rpsM Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855159 rpsD Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014602 mpeY Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KF528780 cpeB Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-60 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY853846 rpsO Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854694 rpsE Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855190 rpsP Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S16 (rpsP) gene, complete cds
CP047933 Genome Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. A15-60 chromosome, complete genome
KF528818 rpcB Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-60 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY853847 rpsQ Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854725 rplF Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L6 (rplF) gene, complete cds
KY855221 rpsR Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S18 (rpsR) gene, complete cds
KY853832 rplQ Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L17 (rplQ) gene, complete cds
KY853848 rpsS Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854756 rpsH Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855252 rpsB Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S2 (rpsB) gene, complete cds
KY853833 rplR Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L18 (rplR) gene, complete cds
KY853849 rpsU Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854787 rplE Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L5 (rplE) gene, complete cds
KY855283 rpsT Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S20 (rpsT) gene, complete cds
KY853834 rplT Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L20 (rplT) gene, complete cds
KY854322 rplO Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L15 (rplO) gene, complete cds
KY854818 rplX Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L24 (rplX) gene, complete cds
KY855314 rpmA Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L27 (rpmA) gene, complete cds
KY853835 rplV Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L22 (rplV) gene, complete cds
KY854353 rpsF Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854849 rplN Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L14 (rplN) gene, complete cds
KY855345 ycf65 Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY853836 rpmB Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854384 rplI Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L9 (rplI) gene, complete cds
KY854880 rplP Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L16 (rplP) gene, complete cds
KY860794 desC3 Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY853837 rpmE Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854415 rplK Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L11 (rplK) gene, complete cds
KY854911 rpsC Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860824 desA3 Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY853838 rmpF Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854446 rplA Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L1 (rplA) gene, complete cds
KY854942 rplB Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L2 (rplB) gene, complete cds
KY860865 desC4 Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY853839 rmpG Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854477 rplJ Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854973 rplW Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L23 (rplW) gene, complete cds
MG014420 apcA Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 allophycocyanin alpha chain (apcA) gene, complete cds
KY853840 rpmH Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854508 rplL Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855004 rplD Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L4 (rplD) gene, complete cds
MG014451 ApcB Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 allophycocyanin beta chain (apcB) gene, complete cds
KY853841 rpmI Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854539 rpsJ Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855035 rplC Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L3 (rplC) gene, complete cds
MG014482 apcD Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY853842 rmpJ Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854570 rpsG Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855066 rpsA1 Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014513 apcF Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY853843 rpsK Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854601 rpsI Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855097 rplS Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L19 (rplS) gene, complete cds
MG014555 cpeY Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY853844 rpsL Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854632 rplM Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 50S ribosomal protein L13 (rplM) gene, complete cds
KY855128 rpsA2 Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014583 mpeB Synechococcus sp. A15-60 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-60 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds

Associated references

Displaying 1 - 3 of 3
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Coello-Camba A, Díaz-Rúa R, Agusti S.  2023.  Design and use of a new primer pair for the characterization of the cyanobacteria Synechococcus and Prochlorococcus communities targeting petB gene through metabarcoding approaches.. MethodsX. :102444. PDF icon Download pdf (1003.58 KB)