RCC2534

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade CRD1
Strain name: 
Biosope_148 D3-Clonal
Strain name synonyms: 
BIOS-E4-1
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
cylindrical
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling regional sea: 
South East Pacific
Sampling country: 
Chile
Sampling ecosystem: 
pelagic
Sampling cruise: 
Biosope
Sampling station: 
EGY4
Sampling depth (m): 
40
Sampling date: 
Sunday, November 28, 2004
Isolation by: 
Garczarek L. / Marie D.
Isolation method: 
Flow cytometry sorting / Serial dilution
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
80
Phenotype pigment: 
Syn type 3cA
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Friday, April 1, 2011
Mother strain: 
RCC1028
Sampling CTD: 
162
Sampling bottle: 
13
Sampling by: 
Garczarek L. / Marie D.
Isolation preculture number: 
148 D3
Isolation medium: 
Pro2
Isolation light: 
100
Deposit to rcc by: 
F. Humily
Purification date: 
Friday, April 1, 2011
Purification by: 
Florian Humily
Purification method: 
Serial platings

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KF528805 rpcB Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-E4-1 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY853954 rpsO Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854700 rpsE Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855196 rpsP Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S16 (rpsP) gene, complete cds
KU377987 petB Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-E4-1 cytochrome b6 (petB) gene, complete cds
KY853955 rpsQ Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854731 rplF Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L6 (rplF) gene, complete cds
KY855227 rpsR Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S18 (rpsR) gene, complete cds
KY853940 rplQ Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY853956 rpsS Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854762 rpsH Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855258 rpsB Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S2 (rpsB) gene, complete cds
KY853941 rplR Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L18 (rplR) gene, complete cds
KY853957 rpsU Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854793 rplE Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L5 (rplE) gene, complete cds
KY855289 rpsT Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S20 (rpsT) gene, complete cds
KY853942 rplT Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854328 rplO Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854824 rplX Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L24 (rplX) gene, complete cds
KY855320 rpmA Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L27 (rpmA) gene, complete cds
KY853943 rplV Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854359 rpsF Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854855 rplN Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L14 (rplN) gene, complete cds
KY855351 ycf65 Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY853944 rpmB Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854390 rplI Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L9 (rplI) gene, complete cds
KY854886 rplP Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860800 desC3 Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY853945 rpmE Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854421 rplK Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L11 (rplK) gene, complete cds
KY854917 rpsC Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860829 desA3 Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY853946 rmpF Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854452 rplA Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L1 (rplA) gene, complete cds
KY854948 rplB Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L2 (rplB) gene, complete cds
KY860867 desC4 Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY853947 rmpG Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854483 rplJ Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854979 rplW Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L23 (rplW) gene, complete cds
MG014414 apcA Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 allophycocyanin alpha chain (apcA) gene, complete cds
KY853948 rpmH Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854514 rplL Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855010 rplD Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L4 (rplD) gene, complete cds
MG014445 ApcB Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 allophycocyanin beta chain (apcB) gene, complete cds
KY853949 rpmI Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854545 rpsJ Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855041 rplC Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L3 (rplC) gene, complete cds
MG014476 apcD Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY853950 rmpJ Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854576 rpsG Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855072 rpsA1 Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014507 apcF Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 allophycocyanin beta-18 chain (apcF) gene, complete cds
KF177884 CA4-A Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-E4-1 CA4-A island genomic sequence
KY853951 rpsK Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854607 rpsI Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855103 rplS Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L19 (rplS) gene, complete cds
MG014536 cpeF Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KF528767 cpeB Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-E4-1 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY853952 rpsL Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854638 rplM Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855134 rpsA2 Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014577 mpeB Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF177885 cpeY Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-E4-1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY853953 rpsN Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854669 rpsM Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855165 rpsD Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-E4-1 30S ribosomal protein S4 (rpsD) gene, complete cds
CP047935 Genome Synechococcus sp. BIOS-E4-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. BIOS-E4-1 chromosome

Associated references

Displaying 1 - 4 of 4
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.
Ferrieux M, Dufour L, Doré H, Ratin M, Guéneuguès A, Chasselin L, Marie D, Rigaut-jalabert F, Le Gall F, Sciandra T et al..  2022.  Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas. Frontiers in Microbiology. 13 PDF icon Download pdf (2.17 MB)