RCC2438

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade V
Strain name: 
Naples Chain Clonal
Strain name synonyms: 
BMK-MC-1
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell assemblage: 
chains
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Mediterranean Sea
Sampling regional sea: 
Tyrrhenian Sea
Sampling site: 
Gulf of Naples
Sampling country: 
Italy
Sampling ecosystem: 
coastal
Sampling cruise: 
BioMarks
Sampling station: 
MC
Sampling depth (m): 
23
Sampling date: 
Tuesday, October 13, 2009
Isolation by: 
Siano R.
Isolation method: 
serial dilution
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
80
Phenotype pigment: 
Syn type 2a
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Thursday, January 13, 2011
Sampling by: 
Siano R.
Isolation medium: 
K
Isolation light: 
15
Deposit to RCC date: 
Thursday, January 13, 2011
Deposit to rcc by: 
F. Humily
Purification date: 
Thursday, January 13, 2011
Purification by: 
Morgane Ratin
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY853979 rplV Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854361 rpsF Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854857 rplN Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L14 (rplN) gene, complete cds
KY855353 ycf65 Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY853980 rpmB Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854392 rplI Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L9 (rplI) gene, complete cds
KY854888 rplP Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860802 desC3 Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY853981 rpmE Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854423 rplK Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L11 (rplK) gene, complete cds
KY854919 rpsC Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860831 desA3 Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY853982 rmpF Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854454 rplA Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L1 (rplA) gene, complete cds
KY854950 rplB Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L2 (rplB) gene, complete cds
KY860853 desA2 Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY853983 rmpG Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854485 rplJ Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854981 rplW Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L23 (rplW) gene, complete cds
KY860869 desC4 Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY853984 rpmH Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854516 rplL Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855012 rplD Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L4 (rplD) gene, complete cds
MG014412 apcA Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 allophycocyanin alpha chain (apcA) gene, complete cds
KY853985 rpmI Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854547 rpsJ Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855043 rplC Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L3 (rplC) gene, complete cds
MG014443 ApcB Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 allophycocyanin beta chain (apcB) gene, complete cds
KY853986 rmpJ Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854578 rpsG Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855074 rpsA1 Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014474 apcD Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY853987 rpsK Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854609 rpsI Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855105 rplS Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L19 (rplS) gene, complete cds
MG014505 apcF Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY853988 rpsL Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854640 rplM Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855136 rpsA2 Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014534 cpeF Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KF528784 cpeB Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BMK-MC-1 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY853989 rpsN Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854671 rpsM Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855167 rpsD Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014550 cpeY Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KF528822 rpcB Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BMK-MC-1 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY853990 rpsO Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854702 rpsE Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855198 rpsP Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S16 (rpsP) gene, complete cds
CP047939 Genome Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. BMK-MC-1 chromosome, complete genome
KU377985 petB Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BMK-MC-1 cytochrome b6 (petB) gene, complete cds
KY853991 rpsQ Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854733 rplF Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L6 (rplF) gene, complete cds
KY855229 rpsR Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S18 (rpsR) gene, complete cds
KY853976 rplQ Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY853992 rpsS Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854764 rpsH Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855260 rpsB Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S2 (rpsB) gene, complete cds
KY853977 rplR Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L18 (rplR) gene, complete cds
KY853993 rpsU Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854795 rplE Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L5 (rplE) gene, complete cds
KY855291 rpsT Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 30S ribosomal protein S20 (rpsT) gene, complete cds
KY853978 rplT Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854330 rplO Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854826 rplX Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L24 (rplX) gene, complete cds
KY855322 rpmA Synechococcus sp. BMK-MC-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BMK-MC-1 50S ribosomal protein L27 (rpmA) gene, complete cds

Associated references

Displaying 1 - 2 of 2
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)