RCC2433

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade VII
Strain name: 
NOUM97013 Clonal
Strain name synonyms: 
NOUM97013
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling regional sea: 
Equatorial Pacific
Sampling country: 
France
Sampling ecosystem: 
pelagic
Sampling cruise: 
Ebene
Sampling depth (m): 
0
Sampling date: 
Tuesday, November 19, 1996
Isolation by: 
Blanchot J., Boulben S.
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
100
Phenotype pigment: 
Syn type 3a
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Thursday, January 13, 2011
Mother strain: 
RCC68
Sampling by: 
Blanchot J
Isolation growth temperature: 
25.00
Deposit to RCC date: 
Thursday, January 13, 2011
Deposit to rcc by: 
F. Humily
Purification date: 
Thursday, January 13, 2011
Purification by: 
Florian Humily
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854104 rplT Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L20 (rplT) gene, complete cds
KY854337 rplO Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L15 (rplO) gene, complete cds
KY854833 rplX Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L24 (rplX) gene, complete cds
KY855329 rpmA Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854105 rplV Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L22 (rplV) gene, complete cds
KY854368 rpsF Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854864 rplN Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L14 (rplN) gene, complete cds
KY855360 ycf65 Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854106 rpmB Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854399 rplI Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L9 (rplI) gene, complete cds
KY854895 rplP Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L16 (rplP) gene, complete cds
KY860809 desC3 Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854107 rpmE Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854430 rplK Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L11 (rplK) gene, complete cds
KY854926 rpsC Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860837 desA3 Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854108 rmpF Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854461 rplA Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L1 (rplA) gene, complete cds
KY854957 rplB Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L2 (rplB) gene, complete cds
KY860857 desA2 Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854109 rmpG Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854492 rplJ Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854988 rplW Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L23 (rplW) gene, complete cds
KY860874 desC4 Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY854110 rpmH Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854523 rplL Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855019 rplD Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L4 (rplD) gene, complete cds
MG014405 apcA Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 allophycocyanin alpha chain (apcA) gene, complete cds
KY854111 rpmI Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854554 rpsJ Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855050 rplC Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L3 (rplC) gene, complete cds
MG014436 ApcB Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 allophycocyanin beta chain (apcB) gene, complete cds
KY854112 rmpJ Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854585 rpsG Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855081 rpsA1 Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014467 apcD Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854113 rpsK Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854616 rpsI Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855112 rplS Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L19 (rplS) gene, complete cds
MG014498 apcF Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY854114 rpsL Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854647 rplM Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L13 (rplM) gene, complete cds
KY855143 rpsA2 Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014531 cpeF Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KF528781 cpeB Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. NOUM97013 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854115 rpsN Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854678 rpsM Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855174 rpsD Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014545 cpeY Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KF528819 rpcB Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. NOUM97013 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854116 rpsO Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854709 rpsE Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855205 rpsP Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S16 (rpsP) gene, complete cds
MG014570 mpeB Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KU377982 petB Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. NOUM97013 cytochrome b6 (petB) gene, complete cds
KY854117 rpsQ Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854740 rplF Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L6 (rplF) gene, complete cds
KY855236 rpsR Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S18 (rpsR) gene, complete cds
MG014593 mpeY Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KY854102 rplQ Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854118 rpsS Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854771 rpsH Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855267 rpsB Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S2 (rpsB) gene, complete cds
CP047941 Genome Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. NOUM97013 chromosome, complete genome
KY854103 rplR Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L18 (rplR) gene, complete cds
KY854119 rpsU Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854802 rplE Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 50S ribosomal protein L5 (rplE) gene, complete cds
KY855298 rpsT Synechococcus sp. NOUM97013 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. NOUM97013 30S ribosomal protein S20 (rpsT) gene, complete cds

Associated references

Displaying 1 - 3 of 3
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.