RCC2381

Synechococcus_sp

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Yes - (D) No information on country of origin, resource sampled pre-NP
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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade VIb
Strain name: 
PROSOPE_97-4 Clonal
Strain name synonyms: 
PROSOPE_97-4, PROS-7-1
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Mediterranean Sea
Sampling ecosystem: 
pelagic
Sampling cruise: 
PROSOPE
Sampling station: 
7
Sampling depth (m): 
5
Sampling date: 
Sunday, September 26, 1999
Isolation by: 
Partensky F.
Isolation method: 
Filtration < 3 µm
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
80
Phenotype pigment: 
Syn type 2a
Remark: 
Genome will be sequenced by Genoscope in 2011
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, December 7, 2010
Mother strain: 
RCC323
Sampling CTD: 
63
Sampling bottle: 
19
Sampling by: 
Partensky F.
Isolation preculture number: 
97
Isolation medium: 
K/10
Isolation light: 
100
Deposit to RCC date: 
Tuesday, December 7, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Tuesday, December 7, 2010
Purification by: 
Florian Humily
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854131 rpsK Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854648 rplM Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855299 rpsT Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854132 rpsL Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854679 rpsM Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855330 rpmA Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854133 rpsN Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854710 rpsE Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855361 ycf65 Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 ribosomal protein Ycf65 (ycf65) gene, complete cds
KF528783 cpeB Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-7-1 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854134 rpsO Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854772 rpsH Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY860810 desC3 Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KF528821 rpcB Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-7-1 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854135 rpsQ Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854834 rplX Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L24 (rplX) gene, complete cds
KY860838 desA3 Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854120 rplQ Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854136 rpsS Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854865 rplN Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L14 (rplN) gene, complete cds
KY860858 desA2 Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854121 rplR Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L18 (rplR) gene, complete cds
KY854137 rpsU Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854896 rplP Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860875 desC4 Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY854122 rplT Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854338 rplO Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854927 rpsC Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860884 des Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 fatty acid desaturase family protein (des) gene, complete cds
KY854123 rplV Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854369 rpsF Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854989 rplW Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L23 (rplW) gene, complete cds
KY860885 desC Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 fatty acid desaturase family protein (desC) gene, complete cds
KY854124 rpmB Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854400 rplI Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L9 (rplI) gene, complete cds
KY855082 rpsA1 Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014404 apcA Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 allophycocyanin alpha chain (apcA) gene, complete cds
KY854125 rpmE Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854431 rplK Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L11 (rplK) gene, complete cds
KY855113 rplS Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L19 (rplS) gene, complete cds
MG014435 ApcB Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 allophycocyanin beta chain (apcB) gene, complete cds
KY854126 rmpF Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854493 rplJ Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY855144 rpsA2 Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014466 apcD Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854127 rmpG Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854524 rplL Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855175 rpsD Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014497 apcF Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY854128 rpmH Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854555 rpsJ Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855206 rpsP Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S16 (rpsP) gene, complete cds
MG014530 cpeF Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KY854129 rpmI Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854586 rpsG Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855237 rpsR Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S18 (rpsR) gene, complete cds
MG014544 cpeY Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY854130 rmpJ Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854617 rpsI Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855268 rpsB Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-7-1 30S ribosomal protein S2 (rpsB) gene, complete cds
CP047945 Genome Synechococcus sp. PROS-7-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. PROS-7-1 chromosome, complete genome

Associated references

Displaying 1 - 3 of 3
Gaignard C., Laroche C., Pierre G., Dubessay P., Delattre C., Gardarin C., Gourvil P., Probert I., Dubuffet A., Michaud P..  2019.  Screening of marine microalgae: Investigation of new exopolysaccharide producers. Algal Research. 44:101711. PDF icon Download pdf (2.59 MB)
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)