RCC2380

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade Ib
Strain name: 
ROS8604 Syn Clonal
Strain name synonyms: 
ROS8604 Syn, ROS 04, ROS8604
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling regional sea: 
English Channel
Sampling site: 
Britanny coast
Sampling country: 
France
Sampling ecosystem: 
coastal
Sampling station: 
Roscoff Estacade
Sampling depth (m): 
0
Sampling date: 
Monday, November 24, 1986
Isolation by: 
Vaulot D., Courties C.
Isolation method: 
Cell sorting
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
80
Phenotype pigment: 
Syn type 3a
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, December 7, 2010
Mother strain: 
RCC32
Sampling by: 
Vaulot D. / Courties C.
Isolation medium: 
f/2
Deposit to RCC date: 
Tuesday, December 7, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Tuesday, December 7, 2010
Purification by: 
Florian Humily
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854174 rplQ Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854190 rpsS Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854775 rpsH Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855271 rpsB Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S2 (rpsB) gene, complete cds
KY854175 rplR Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L18 (rplR) gene, complete cds
KY854191 rpsU Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854806 rplE Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L5 (rplE) gene, complete cds
KY855302 rpsT Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854176 rplT Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L20 (rplT) gene, complete cds
KY854341 rplO Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L15 (rplO) gene, complete cds
KY854837 rplX Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L24 (rplX) gene, complete cds
KY855333 rpmA Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854177 rplV Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L22 (rplV) gene, complete cds
KY854372 rpsF Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854868 rplN Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L14 (rplN) gene, complete cds
KY855364 ycf65 Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854178 rpmB Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854403 rplI Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L9 (rplI) gene, complete cds
KY854899 rplP Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L16 (rplP) gene, complete cds
KY860813 desC3 Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854179 rpmE Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854434 rplK Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L11 (rplK) gene, complete cds
KY854930 rpsC Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860841 desA3 Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854180 rmpF Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854465 rplA Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L1 (rplA) gene, complete cds
KY854961 rplB Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L2 (rplB) gene, complete cds
KY860877 desC4 Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY854181 rmpG Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854496 rplJ Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854992 rplW Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L23 (rplW) gene, complete cds
MG014401 apcA Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 allophycocyanin alpha chain (apcA) gene, complete cds
KY854182 rpmH Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854527 rplL Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855023 rplD Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L4 (rplD) gene, complete cds
MG014432 ApcB Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 allophycocyanin beta chain (apcB) gene, complete cds
KY854183 rpmI Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854558 rpsJ Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855054 rplC Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L3 (rplC) gene, complete cds
MG014463 apcD Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854184 rmpJ Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854589 rpsG Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855085 rpsA1 Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014494 apcF Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY854185 rpsK Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854620 rpsI Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855116 rplS Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L19 (rplS) gene, complete cds
MG014528 cpeF Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KF528765 cpeB Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. ROS8604 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854186 rpsL Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854651 rplM Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L13 (rplM) gene, complete cds
KY855147 rpsA2 Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014542 cpeY Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KF528803 rpcB Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. ROS8604 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854187 rpsN Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854682 rpsM Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855178 rpsD Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014567 mpeB Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KT955729 mpeA Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. ROS8604 C-phycoerythrin class II alpha chain (mpeA) gene, complete cds
KY854188 rpsO Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854713 rpsE Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855209 rpsP Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S16 (rpsP) gene, complete cds
MG014591 mpeY Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KT955719 mpeB Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. ROS8604 C-phycoerythrin class II beta chain (mpeB) gene, complete cds
KY854189 rpsQ Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854744 rplF Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 50S ribosomal protein L6 (rplF) gene, complete cds
KY855240 rpsR Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. ROS8604 30S ribosomal protein S18 (rpsR) gene, complete cds
CP047946 Genome Synechococcus sp. ROS8604 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. ROS8604 chromosome, complete genome

Associated references

Displaying 1 - 9 of 9
Decamp A, Michelo O, Rabbat C, Laroche C, Grizeau D, Pruvost J, Gonçalves O.  2021.  A New, Quick, and Simple Protocol to Evaluate Microalgae Polysaccharide Composition. Marine Drugs. 19:101. PDF icon Download pdf (1.77 MB)
Pittera J, Partensky F, Six C.  2017.  Adaptive thermostability of light-harvesting complexes in marine picocyanobacteria. The ISME Journal. 11:112–124. PDF icon Download pdf (2.07 MB)
Gaignard C., Laroche C., Pierre G., Dubessay P., Delattre C., Gardarin C., Gourvil P., Probert I., Dubuffet A., Michaud P..  2019.  Screening of marine microalgae: Investigation of new exopolysaccharide producers. Algal Research. 44:101711. PDF icon Download pdf (2.59 MB)
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.
Olusoji OD, Spaak JW, Holmes M, Neyens T, Aerts M, De Laender F.  2021.  cyanoFilter: An R package to identify phytoplankton populations from flow cytometry data using cell pigmentation and granularity. Ecological Modelling. 460:109743. PDF icon Download pdf (1.29 MB)
Doré H, Leconte J, Guyet U, Breton S, Farrant GK, Demory D, Ratin M, Hoebeke M, Corre E, Pitt FD et al..  2022.  Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts. mSystems. :e00656–22. PDF icon Download pdf (1.87 MB)
Cruz JDiogo, Delattre C, Felpeto ABarreiro, Pereira H, Pierre G, Morais J, Petit E, Silva J, Azevedo J, Elboutachfaiti R et al..  2023.  Bioprospecting for industrially relevant exopolysaccharide-producing cyanobacteria under Portuguese simulated climate. Scientific Reports. 13:13561. PDF icon Download pdf (2.12 MB)