RCC2379

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade IIIa
Strain name: 
BOUM 118-1
Strain name synonyms: 
BOUM118
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
motile
ORIGIN
Sampling ocean: 
Mediterranean Sea
Sampling country: 
Cyprus
Sampling ecosystem: 
pelagic
Sampling cruise: 
BOUM
Sampling station: 
C
Sampling depth (m): 
5
Sampling date: 
Wednesday, October 1, 2008
Isolation by: 
Marie D. / Le Gall F.
Isolation method: 
Flow cytometry sorting
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
80
Phenotype pigment: 
Syn type 3c
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, December 7, 2010
Sampling CTD: 
48
Sampling by: 
Garczarek L. / Marie D.
Isolation medium: 
PCR-S11
Isolation light: 
100
Deposit to RCC date: 
Friday, December 3, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Wednesday, December 1, 2010
Purification by: 
Christophe Six
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KF528770 cpeB Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BOUM118 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854005 rpsK Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854610 rpsI Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855106 rplS Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L19 (rplS) gene, complete cds
MG014549 cpeY Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KF528808 rpcB Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BOUM118 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854006 rpsL Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854641 rplM Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L13 (rplM) gene, complete cds
KY855137 rpsA2 Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014575 mpeB Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KT955732 mpeA Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BOUM118 C-phycoerythrin class II alpha chain (mpeA) gene, complete cds
KY854007 rpsN Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854672 rpsM Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855168 rpsD Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014597 mpeY Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KT955722 mpeB Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BOUM118 C-phycoerythrin class II beta chain (mpeB) gene, complete cds
KY854008 rpsO Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854703 rpsE Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855199 rpsP Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S16 (rpsP) gene, complete cds
CP047947 Genome Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. BOUM118 chromosome
KU377984 petB Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BOUM118 cytochrome b6 (petB) gene, complete cds
KY854009 rpsQ Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854734 rplF Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L6 (rplF) gene, complete cds
KY855230 rpsR Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S18 (rpsR) gene, complete cds
KY853994 rplQ Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854010 rpsS Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854765 rpsH Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855261 rpsB Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S2 (rpsB) gene, complete cds
KY853995 rplR Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L18 (rplR) gene, complete cds
KY854011 rpsU Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854796 rplE Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L5 (rplE) gene, complete cds
KY855292 rpsT Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S20 (rpsT) gene, complete cds
KY853996 rplT Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L20 (rplT) gene, complete cds
KY854331 rplO Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L15 (rplO) gene, complete cds
KY854827 rplX Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L24 (rplX) gene, complete cds
KY855323 rpmA Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L27 (rpmA) gene, complete cds
KY853997 rplV Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L22 (rplV) gene, complete cds
KY854362 rpsF Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854858 rplN Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L14 (rplN) gene, complete cds
KY855354 ycf65 Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY853998 rpmB Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854393 rplI Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L9 (rplI) gene, complete cds
KY854889 rplP Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L16 (rplP) gene, complete cds
KY860803 desC3 Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY853999 rpmE Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854424 rplK Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L11 (rplK) gene, complete cds
KY854920 rpsC Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860832 desA3 Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854000 rmpF Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854455 rplA Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L1 (rplA) gene, complete cds
KY854951 rplB Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L2 (rplB) gene, complete cds
KY860854 desA2 Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854001 rmpG Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854486 rplJ Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854982 rplW Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L23 (rplW) gene, complete cds
MG014411 apcA Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 allophycocyanin alpha chain (apcA) gene, complete cds
KY854002 rpmH Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854517 rplL Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855013 rplD Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L4 (rplD) gene, complete cds
MG014442 ApcB Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 allophycocyanin beta chain (apcB) gene, complete cds
KY854003 rpmI Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854548 rpsJ Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855044 rplC Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L3 (rplC) gene, complete cds
MG014473 apcD Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854004 rmpJ Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854579 rpsG Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855075 rpsA1 Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014504 apcF Synechococcus sp. BOUM118 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BOUM118 allophycocyanin beta-18 chain (apcF) gene, complete cds

Associated references

Displaying 1 - 2 of 2
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)