RCC2374

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade Iic
Strain name: 
A15-62 Clonal
Strain name synonyms: 
A15-62
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling country: 
Cap Verde
Sampling ecosystem: 
pelagic
Sampling cruise: 
AMT 15
Sampling station: 
15
Sampling depth (m): 
15
Sampling date: 
Monday, October 4, 2004
Isolation by: 
Zwirglmaier K.
Isolation method: 
enrichment, serial platings
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
80
Phenotype pigment: 
Syn type 3dB
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, December 7, 2010
Mother strain: 
RCC1089
Sampling CTD: 
44
Sampling bottle: 
17
Sampling by: 
Zwirglmaier K.
Deposit to RCC date: 
Friday, December 3, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Wednesday, December 1, 2010
Purification by: 
Florian Humily
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY853850 rplQ Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L17 (rplQ) gene, complete cds
KY853866 rpsS Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854757 rpsH Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855253 rpsB Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S2 (rpsB) gene, complete cds
KY853851 rplR Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L18 (rplR) gene, complete cds
KY853867 rpsU Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854788 rplE Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L5 (rplE) gene, complete cds
KY855284 rpsT Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S20 (rpsT) gene, complete cds
KY853852 rplT Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L20 (rplT) gene, complete cds
KY854323 rplO Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L15 (rplO) gene, complete cds
KY854819 rplX Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L24 (rplX) gene, complete cds
KY855315 rpmA Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L27 (rpmA) gene, complete cds
KY853853 rplV Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L22 (rplV) gene, complete cds
KY854354 rpsF Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854850 rplN Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L14 (rplN) gene, complete cds
KY855346 ycf65 Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY853854 rpmB Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854385 rplI Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L9 (rplI) gene, complete cds
KY854881 rplP Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L16 (rplP) gene, complete cds
KY860795 desC3 Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY853855 rpmE Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854416 rplK Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L11 (rplK) gene, complete cds
KY854912 rpsC Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860848 desA2 Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY853856 rmpF Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854447 rplA Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L1 (rplA) gene, complete cds
KY854943 rplB Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L2 (rplB) gene, complete cds
MG014419 apcA Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 allophycocyanin alpha chain (apcA) gene, complete cds
KY853857 rmpG Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854478 rplJ Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854974 rplW Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L23 (rplW) gene, complete cds
MG014450 ApcB Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 allophycocyanin beta chain (apcB) gene, complete cds
KY853858 rpmH Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854509 rplL Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855005 rplD Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L4 (rplD) gene, complete cds
MG014481 apcD Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 allophycocyanin alpha-B chain (apcD) gene, complete cds
KF177881 CA4-B Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-62 CA4-B island genomic sequence
KY853859 rpmI Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854540 rpsJ Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855036 rplC Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L3 (rplC) gene, complete cds
MG014512 apcF Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 allophycocyanin beta-18 chain (apcF) gene, complete cds
KF528777 cpeB Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-62 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY853860 rmpJ Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854571 rpsG Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855067 rpsA1 Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014582 mpeB Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF177882 cpeY Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-62 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY853861 rpsK Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854602 rpsI Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855098 rplS Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L19 (rplS) gene, complete cds
CP047950 Genome Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. A15-62 chromosome, complete genome
KF177883 mpeY Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-62 putative phycoerythrobilin:phycoerythrin II lyase (mpeY) gene, complete cds
KY853862 rpsL Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854633 rplM Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L13 (rplM) gene, complete cds
KY855129 rpsA2 Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S1 (rpsA2) gene, complete cds
KF528815 rpcB Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-62 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY853863 rpsN Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854664 rpsM Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855160 rpsD Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S4 (rpsD) gene, complete cds
KT955733 mpeA Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-62 C-phycoerythrin class II alpha chain (mpeA) gene, complete cds
KY853864 rpsO Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854695 rpsE Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855191 rpsP Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S16 (rpsP) gene, complete cds
KT955723 mpeB Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. A15-62 C-phycoerythrin class II beta chain (mpeB) gene, complete cds
KY853865 rpsQ Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854726 rplF Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 50S ribosomal protein L6 (rplF) gene, complete cds
KY855222 rpsR Synechococcus sp. A15-62 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. A15-62 30S ribosomal protein S18 (rpsR) gene, complete cds

Associated references

Displaying 1 - 6 of 6
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Breton S, Jouhet J, Guyet U, Gros V, Pittera J, Demory D, Partensky F, Doré H, Ratin M, Maréchal É et al..  2019.  Unveiling membrane thermoregulation strategies in marine picocyanobacteria. New Phytologist. :nph.16239. PDF icon Download pdf (16.94 MB)
Grébert T, Nguyen AA, Pokhrel S, Joseph KLynn, Ratin M, Dufour L, Chen B, Haney AM, Karty JA, Trinidad JC et al..  2021.  Molecular bases of an alternative dual-enzyme system for light color acclimation of marine \textit{Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. 118:e2019715118. PDF icon Download pdf (909.21 KB), PDF icon Download pdf (1.68 MB)
Ferrieux M, Dufour L, Doré H, Ratin M, Guéneuguès A, Chasselin L, Marie D, Rigaut-jalabert F, Le Gall F, Sciandra T et al..  2022.  Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas. Frontiers in Microbiology. 13 PDF icon Download pdf (2.17 MB)
Dufour L, Garczarek L, Gouriou B, Clairet J, Ratin M, Partensky F.  2024.  Differential acclimation kinetics of the two forms of type IV chromatic acclimaters occurring in marine Synechococcus cyanobacteria. Frontiers in Microbiology. 15:1349322. PDF icon Download pdf (2.03 MB)