RCC2368

Synechococcus_sp

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Yes - (D) No information on country of origin, resource sampled pre-NP

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade Via
Strain name: 
MEDNS5 Clonal
Strain name synonyms: 
MEDNS5
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Mediterranean Sea
Sampling ecosystem: 
pelagic
Sampling cruise: 
Discovery 203
Sampling station: 
MA1
Sampling depth (m): 
80
Sampling date: 
Thursday, July 1, 1993
Isolation by: 
Simon N.
CULTURE CONDITIONS
RCC medium: 
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
80
Phenotype pigment: 
Syn type 3c
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, December 7, 2010
Mother strain: 
RCC42
Deposit to RCC date: 
Wednesday, December 1, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Wednesday, December 1, 2010
Purification by: 
Florian Humily
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854036 rmpF Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854457 rplA Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L1 (rplA) gene, complete cds
KY854953 rplB Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L2 (rplB) gene, complete cds
KY860856 desA2 Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854037 rmpG Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854488 rplJ Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854984 rplW Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L23 (rplW) gene, complete cds
KY860870 desC4 Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY854038 rpmH Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854519 rplL Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855015 rplD Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L4 (rplD) gene, complete cds
MG014409 apcA Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 allophycocyanin alpha chain (apcA) gene, complete cds
KY854039 rpmI Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854550 rpsJ Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855046 rplC Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L3 (rplC) gene, complete cds
MG014440 ApcB Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 allophycocyanin beta chain (apcB) gene, complete cds
KY854040 rmpJ Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854581 rpsG Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855077 rpsA1 Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014471 apcD Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854041 rpsK Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854612 rpsI Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855108 rplS Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L19 (rplS) gene, complete cds
MG014502 apcF Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY854042 rpsL Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854643 rplM Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L13 (rplM) gene, complete cds
KY855139 rpsA2 Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014547 cpeY Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KF528769 cpeB Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. MEDNS5 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854043 rpsN Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854674 rpsM Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855170 rpsD Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014573 mpeB Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF528807 rpcB Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. MEDNS5 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854044 rpsO Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854705 rpsE Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855201 rpsP Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S16 (rpsP) gene, complete cds
MG014595 mpeY Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KF177889 CA4-B Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. Minos11 CA4-B island genomic sequence
KY854045 rpsQ Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854736 rplF Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L6 (rplF) gene, complete cds
KY855232 rpsR Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S18 (rpsR) gene, complete cds
CP047952 Genome Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. MEDNS5 chromosome, complete genome
KY854030 rplQ Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854046 rpsS Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854767 rpsH Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855263 rpsB Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S2 (rpsB) gene, complete cds
KY854031 rplR Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L18 (rplR) gene, complete cds
KY854047 rpsU Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854798 rplE Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L5 (rplE) gene, complete cds
KY855294 rpsT Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854032 rplT Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L20 (rplT) gene, complete cds
KY854333 rplO Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L15 (rplO) gene, complete cds
KY854829 rplX Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L24 (rplX) gene, complete cds
KY855325 rpmA Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854033 rplV Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L22 (rplV) gene, complete cds
KY854364 rpsF Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854860 rplN Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L14 (rplN) gene, complete cds
KY855356 ycf65 Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854034 rpmB Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854395 rplI Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L9 (rplI) gene, complete cds
KY854891 rplP Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L16 (rplP) gene, complete cds
KY860805 desC3 Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854035 rpmE Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854426 rplK Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 50S ribosomal protein L11 (rplK) gene, complete cds
KY854922 rpsC Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860833 desA3 Synechococcus sp. MEDNS5 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MEDNS5 delta-12 fatty acid desaturase (desA3) gene, complete cds