RCC2319

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.3
Strain name: 
MINSyn129-20m-11-A Clonal
Strain name synonyms: 
MIN 11 clonal, MINOS11
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Mediterranean Sea
Sampling country: 
Libya
Sampling ecosystem: 
pelagic
Sampling cruise: 
MINOS
Sampling station: 
17
Sampling depth (m): 
20
Sampling date: 
Wednesday, June 19, 1996
Isolation by: 
Vaulot D.
Isolation method: 
Enrichment
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
80
Phenotype pigment: 
Syn type 3dB
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, November 2, 2010
Mother strain: 
RCC61
Sampling CTD: 
129
Sampling bottle: 
11
Sampling by: 
Vaulot D.
Deposit to RCC date: 
Tuesday, November 2, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Tuesday, November 2, 2010
Purification by: 
Christophe Six
Purification method: 
One colony on plate (3 times)

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KF177890 cpeY Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. Minos11 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY854060 rpsL Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854644 rplM Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L13 (rplM) gene, complete cds
KY855140 rpsA2 Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S1 (rpsA2) gene, complete cds
CP047953 Genome Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. Minos11 chromosome, complete genome
KF177891 mpeY Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. Minos11 putative phycoerythrobilin:phycoerythrin II lyase (mpeY) gene, complete cds
KY854061 rpsN Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854675 rpsM Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855171 rpsD Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S4 (rpsD) gene, complete cds
KF528826 rpcB Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. Minos11 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854062 rpsO Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854706 rpsE Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855202 rpsP Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S16 (rpsP) gene, complete cds
KU377983 petB Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. Minos11 cytochrome b6 (petB) gene, complete cds
KY854063 rpsQ Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854737 rplF Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L6 (rplF) gene, complete cds
KY855233 rpsR Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S18 (rpsR) gene, complete cds
KY854048 rplQ Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854064 rpsS Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854768 rpsH Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855264 rpsB Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S2 (rpsB) gene, complete cds
KY854049 rplR Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L18 (rplR) gene, complete cds
KY854065 rpsU Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854799 rplE Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L5 (rplE) gene, complete cds
KY855295 rpsT Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854050 rplT Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L20 (rplT) gene, complete cds
KY854334 rplO Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L15 (rplO) gene, complete cds
KY854830 rplX Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L24 (rplX) gene, complete cds
KY855326 rpmA Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854051 rplV Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L22 (rplV) gene, complete cds
KY854365 rpsF Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854861 rplN Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L14 (rplN) gene, complete cds
KY855357 ycf65 Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854052 rpmB Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854396 rplI Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L9 (rplI) gene, complete cds
KY854892 rplP Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L16 (rplP) gene, complete cds
KY860806 desC3 Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854053 rpmE Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854427 rplK Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L11 (rplK) gene, complete cds
KY854923 rpsC Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860834 desA3 Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854054 rmpF Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854458 rplA Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L1 (rplA) gene, complete cds
KY854954 rplB Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L2 (rplB) gene, complete cds
KY860871 desC4 Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY854055 rmpG Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854489 rplJ Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854985 rplW Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L23 (rplW) gene, complete cds
MG014408 apcA Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 isolate MINOS11 allophycocyanin alpha chain (apcA) gene, complete cds
KY854056 rpmH Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854520 rplL Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855016 rplD Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L4 (rplD) gene, complete cds
MG014439 ApcB Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 isolate MINOS11 allophycocyanin beta chain (apcB) gene, complete cds
KY854057 rpmI Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854551 rpsJ Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855047 rplC Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L3 (rplC) gene, complete cds
MG014470 apcD Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 isolate MINOS11 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854058 rmpJ Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854582 rpsG Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855078 rpsA1 Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014501 apcF Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 isolate MINOS11 allophycocyanin beta-18 chain (apcF) gene, complete cds
KF528785 cpeB Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. Minos11 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854059 rpsK Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854613 rpsI Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855109 rplS Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 50S ribosomal protein L19 (rplS) gene, complete cds
MG014572 mpeB Synechococcus sp. Minos11 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. Minos11 isolate MINOS11 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds

Associated references

Displaying 1 - 4 of 4
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Coello-Camba A, Díaz-Rúa R, Agusti S.  2023.  Design and use of a new primer pair for the characterization of the cyanobacteria Synechococcus and Prochlorococcus communities targeting petB gene through metabarcoding approaches.. MethodsX. :102444. PDF icon Download pdf (1003.58 KB)
Dufour L, Garczarek L, Gouriou B, Clairet J, Ratin M, Partensky F.  2024.  Differential acclimation kinetics of the two forms of type IV chromatic acclimaters occurring in marine Synechococcus cyanobacteria. Frontiers in Microbiology. 15:1349322. PDF icon Download pdf (2.03 MB)