RCC1086

Synechococcus_sp

Distributed

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade Ia
Strain name: 
CC9311
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling site: 
California current
Sampling country: 
USA
Sampling ecosystem: 
pelagic
Sampling comment: 
posotiion from https://calcofi.org/field-work/station-info.html
Sampling cruise: 
CalCOFI cruise 9304
Sampling station: 
83.110
Sampling depth (m): 
95
Sampling date: 
Thursday, April 8, 1993
Isolation by: 
Palenik B.
CULTURE CONDITIONS
RCC medium: 
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
80
Phenotype pigment: 
Syn type 3dA
Remark: 
Genome sequenced by JGI. This strain can grow well in PCR-S11, which offers only NH4 as nitrogen source. Adding NO3 to this medium would also satisfy this strain, however without any significant consequence on the growth rate. RCC1086 is a cold temperate ecotype of marine Synechococcus (i.e. Clade I from subcluster 5.1). This means that it will grow between about 8 and 25°C, with optimal growth near 22-24°C, depending on the light irradiance applied. Marine Synechococcus exhibit much lower growth rates than the freshwater Synechocystis sp. PCC 6803: it takes about 10 days to have a well-colored culture when grown under 20 µmol photons/m²/s at 22°C. Details on the culture conditions of Synechococcus sp. CC9311 can also be retrieved from the articles of Brian Palenik (Scripps), who isolated and purified this strain.
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Friday, July 13, 2007
Sampling by: 
Palenik B.
Deposit to RCC date: 
Thursday, June 1, 2006
Deposit to rcc by: 
B. Palenik

Sequences available for this RCC strain

GenBank Accession Gene name Description
CP000435 Genome Synechococcus sp. CC9311
NC_008319 Genome Synechococcus sp. CC9311

Associated references

Displaying 1 - 12 of 12
Stuart RK, Bundy R, Buck K, Ghassemain M, Barbeau K, Palenik B.  2017.  Copper toxicity response influences mesotrophic S ynechococcus community structure. Environmental Microbiology. 19:756–769. PDF icon Download pdf (1.37 MB)
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Baines SB, Twining BS, Brzezinski Ma., Krause JW, Vogt S, Assael D, McDaniel H.  2012.  Significant silicon accumulation by marine picocyanobacteria. Nature Geoscience. 5:886–891. PDF icon Download pdf (635.56 KB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.
Yoo YDu, Seong KAh, Jeong HJin, Yih W, Rho JRae, Nam SWon, Kim HSeop.  2017.  Mixotrophy in the marine red-tide cryptophyte Teleaulax amphioxeia and ingestion and grazing impact of cryptophytes on natural populations of bacteria in Korean coastal waters. Harmful Algae. 68:105–117. PDF icon Download pdf (1.99 MB)
Toledo G, Palenik B.  1997.  Synechococcus diversity in the California current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains.. Applied and environmental microbiology. 63:4298–4303. PDF icon Download pdf (141.37 KB)
Hamilton T.J, Paz-Yepes J., Morrison R.A, Palenik B., Tresguerres M..  2014.  Exposure to bloom-like concentrations of two marine Synechococcus cyanobacteria (strains CC9311 and CC9902) differentially alters fish behaviour. Conservation Physiology. 2 PDF icon Download pdf (1.97 MB)
Chen H, Lin H, Jiang P, Li F, Qin S.  2013.  Genetic transformation of marine cyanobacterium Synechococcus sp. CC9311 (Cyanophyceae) by electroporation. Chinese Journal of Oceanology and Limnology. 31:416–420. PDF icon Download pdf (360.8 KB)
Stuart RK, Brahamsha B, Busby K, Palenik B.  2013.  Genomic island genes in a coastal marine Synechococcus strain confer enhanced tolerance to copper and oxidative stress. The ISME Journal. 7:1139–1149. PDF icon Download pdf (544.84 KB)
Palenik B, Ren Q, Dupont CL, Myers GS, Heidelberg JF, Badger JH, Madupu R, Nelson WC, Brinkac LM, Dodson RJ et al..  2006.  Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment. Proceedings of the National Academy of Sciences. 103:13555–13559. PDF icon Download pdf (1.16 MB)
Doré H, Leconte J, Guyet U, Breton S, Farrant GK, Demory D, Ratin M, Hoebeke M, Corre E, Pitt FD et al..  2022.  Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts. mSystems. :e00656–22. PDF icon Download pdf (1.87 MB)