%0 Journal Article %J Journal of Phycology %D 2022 %T Molecular phylogeny of the spiny-surfaced species of the dinoflagellate Prorocentrum with the description of P. Thermophilum sp. nov. and P. criophilum sp. nov. (Prorocentrales, Dinophyceae) %A Gómez, Fernando %A Gourvil, Priscillia %A Li, Tangcheng %A Huang, Yulin %A Zhang, Huan %A Courcot, Lucie %A Artigas, Luis F. %A Soler Onís, Emilio %A Gutierrez-Rodriguez, Andres %A Lin, Senjie %K Dinophyta %K HABs %K harmful algae blooms %K molecular phylogenetics %K new species %K Prorocentraceae %K RCC6871 %K RCC6872 %K taxonomy %X Spiny-surfaced species of Prorocentrum forms harmful algal blooms, and its taxonomic identity is obscure due to the size and shape variability. Molecular phylogenies reveal two major clades: one for P. cordatum with sequences mainly retrieved as P. minimum, and other for P. shikokuense with sequences also retrieved as P. dentatum and P. donghaiense. Several closely related clades still need to be characterized. Here, we provide SSU- and LSU rRNA, and ITS gene sequences of the strain CCMP3122 isolated from Florida (initially named P. donghaiense) and strains Prorocentrum sp. RCC6871–2 from the Ross Sea, Antarctica. We describe Prorocentrum thermophilum sp. nov. based on the strain CCMP3122, a species also distributed in the open waters of Gulf of Mexico, New Zealand and the Arabian Gulf; and Prorocentrum criophilum sp. nov. based on the strain RCC6872, which is distributed in the Antarctic Ocean and the Arctic Sea. Prorocentrum thermophilum is roundish ( 14 μm long, 12 μm wide), with an inconspicuous anterior spine-like prolongation under light microscopy, valves with tiny, short knobs (5–7 per μm2), and several (<7) large trichocyst pores ( 0.3 μm) in the right valve, as well as smaller pores ( 0.15 μm). Prorocentrum criophilum is round in valve view ( 11 μm long, 10 μm wide) and asymmetrically roundish in lateral view, the periflagellar area was not discernible under light microscopy, valves with very tiny, short knobs (6–10 per μm2), and at least twelve large pores in the right valve. Other potentially undescribed species of spiny-surfaced Prorocentrum are discussed %B Journal of Phycology %V n/a %G eng %U http://onlinelibrary.wiley.com/doi/abs/10.1111/jpy.13298 %R 10.1111/jpy.13298 %0 Journal Article %J The ISME Journal %D 2019 %T Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth %A Kashiyama, Yuichiro %A Yokoyama, Akiko %A Shiratori, Takashi %A Hess, Sebastian %A Not, Fabrice %A Bachy, Charles %A Gutierrez-Rodriguez, Andres %A Kawahara, Jun %A Suzaki, Toshinobu %A Nakazawa, Masami %A Ishikawa, Takahiro %A Maruyama, Moe %A Wang, Mengyun %A Chen, Man %A Gong, Yingchun %A Seto, Kensuke %A Kagami, Maiko %A Hamamoto, Yoko %A Honda, Daiske %A Umetani, Takahiro %A Shihongi, Akira %A Kayama, Motoki %A Matsuda, Toshiki %A Taira, Junya %A Yabuki, Akinori %A Tsuchiya, Masashi %A Hirakawa, Yoshihisa %A Kawaguchi, Akane %A Nomura, Mami %A Nakamura, Atsushi %A Namba, Noriaki %A Matsumoto, Mitsufumi %A Tanaka, Tsuyoshi %A Yoshino, Tomoko %A Higuchi, Rina %A Yamamoto, Akihiro %A Maruyama, Tadanobu %A Yamaguchi, Aika %A Uzuka, Akihiro %A Miyagishima, Shinya %A Tanifuji, Goro %A Kawachi, Masanobu %A Kinoshita, Yusuke %A Tamiaki, Hitoshi %K Biochemistry %K Biogeochemistry %K Cellular microbiology %K microbial ecology %K RCC164 %K RCC22 %K RCC24 %K RCC375 %K RCC916 %X Extant eukaryote ecology is primarily sustained by oxygenic photosynthesis, in which chlorophylls play essential roles. The exceptional photosensitivity of chlorophylls allows them to harvest solar energy for photosynthesis, but on the other hand, they also generate cytotoxic reactive oxygen species. A risk of such phototoxicity of the chlorophyll must become particularly prominent upon dynamic cellular interactions that potentially disrupt the mechanisms that are designed to quench photoexcited chlorophylls in the phototrophic cells. Extensive examination of a wide variety of phagotrophic, parasitic, and phototrophic microeukaryotes demonstrates that a catabolic process that converts chlorophylls into nonphotosensitive 132,173-cyclopheophorbide enols (CPEs) is phylogenetically ubiquitous among extant eukaryotes. The accumulation of CPEs is identified in phagotrophic algivores belonging to virtually all major eukaryotic assemblages with the exception of Archaeplastida, in which no algivorous species have been reported. In addition, accumulation of CPEs is revealed to be common among phototrophic microeukaryotes (i.e., microalgae) along with dismantling of their secondary chloroplasts. Thus, we infer that CPE-accumulating chlorophyll catabolism (CACC) primarily evolved among algivorous microeukaryotes to detoxify chlorophylls in an early stage of their evolution. Subsequently, it also underpinned photosynthetic endosymbiosis by securing close interactions with photosynthetic machinery containing abundant chlorophylls, which led to the acquisition of secondary chloroplasts. Our results strongly suggest that CACC, which allowed the consumption of oxygenic primary producers, ultimately permitted the successful radiation of the eukaryotes throughout and after the late Proterozoic global oxygenation. %B The ISME Journal %P 1 %8 feb %G eng %U http://www.nature.com/articles/s41396-019-0377-0 %R 10.1038/s41396-019-0377-0 %0 Journal Article %J Molecular Ecology %D 2018 %T Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network %A Meng, Arnaud %A Corre, Erwan %A Probert, Ian %A Gutierrez-Rodriguez, Andres %A Siano, Raffaele %A Annamale, Anita %A Alberti, Adriana %A Da Silva, Corinne %A Wincker, Patrick %A Le Crom, Stéphane %A Not, Fabrice %A Bittner, Lucie %K Genomics/Proteomics %K Microbial Biology %K Molecular Evolution %K Protists %K rcc1491 %K RCC1516 %K RCC3387 %K rcc3468 %K rcc3507 %K transcriptomics %X Dinoflagellates are one of the most abundant and functionally diverse groups of eukaryotes. Despite an overall scarcity of genomic information for dinoflagellates, constantly emerging high-throughput sequencing resources can be used to characterize and compare these organisms. We assembled de novo and processed 46 dinoflagellate transcriptomes and used a sequence similarity network (SSN) to compare the underlying genomic basis of functional features within the group. This approach constitutes the most comprehensive picture to date of the genomic potential of dinoflagellates. A core predicted proteome composed of 252 connected components (CCs) of putative conserved protein domains (pCDs) was identified. Of these, 206 were novel and 16 lacked any functional annotation in public databases. Integration of functional information in our network analyses allowed investigation of pCDs specifically associated to functional traits. With respect to toxicity, sequences homologous to those of proteins found in species with toxicity potential (e.g. sxtA4 and sxtG) were not specific to known toxin-producing species. Although not fully specific to symbiosis, the most represented functions associated with proteins involved in the symbiotic trait were related to membrane processes and ion transport. Overall, our SSN approach led to identification of 45,207 and 90,794 specific and constitutive pCDs of respectively the toxic and symbiotic species represented in our analyses. Of these, 56% and 57% respectively (i.e. 25,393 and 52,193 pCDs) completely lacked annotation in public databases. This stresses the extent of our lack of knowledge, while emphasizing the potential of SSNs to identify candidate pCDs for further functional genomic characterization. This article is protected by copyright. All rights reserved. %B Molecular Ecology %P 0–2 %G eng %U http://www.ncbi.nlm.nih.gov/pubmed/29624751%0Ahttp://doi.wiley.com/10.1111/mec.14579 %R 10.1111/mec.14579 %0 Journal Article %J Limnology and Oceanography %D 2017 %T Dimethylated sulfur compounds in symbiotic protists: A potentially significant source for marine DMS(P) %A Gutierrez-Rodriguez, Andres %A Pillet, Loic %A Biard, Tristan %A Said-Ahmad, Ward %A Amrani, Alon %A Simó, Rafel %A Not, Fabrice %K 2017 %K rcc1383 %K rcc1491 %K rcc3468 %K rcc3507 %K sbr?hyto$_\textrmd$ipo %B Limnology and Oceanography %8 feb %G eng %U http://doi.wiley.com/10.1002/lno.10491 %R 10.1002/lno.10491