RCC999

Chloroparvula_sp_B2

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No - (E) Country of origin is party to the NP and ABS authorization may be required: contact the relevant ABS NFP
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IDENTITY

Chloroparvula_sp_B2

Domain: 
Eukaryota
Division: 
Chlorophyta
Class: 
Chloropicophyceae
Order: 
Chloropicales
Family: 
Chloropicaceae
Genus: 
Chloroparvula
Genus synonym: 
Clade_VIIB2
Remark: 
Clade_VIIB2
Strain name: 
Biosope_46 C4S
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Contaminant type: 
18S sequence appears contaminated
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
2.50
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling regional sea: 
South East Pacific
Sampling country: 
France
Sampling ecosystem: 
pelagic
Sampling cruise: 
Biosope
Sampling station: 
HLN3
Sampling depth (m): 
100
Sampling date: 
Tuesday, November 2, 2004
Isolation by: 
Vaulot D. / Marie D.
Isolation method: 
Filtration < 0.6 um followed by Cell sorting
CULTURE CONDITIONS
RCC medium: 
K
RCC temperature: 
20.00
RCC transfer period weeks: 
4.00
Remark: 
Transcriptome sequence is planned in project Oceanomics (2013).
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Friday, September 22, 2006
Sampling CTD: 
51
Sampling bottle: 
5
Sampling by: 
Vaulot D. / Marie D.
Isolation preculture number: 
46 C4S 144
Isolation medium: 
Pro2/100
Isolation light: 
10
Purification by: 
Le Gall F.

Sequences available for this RCC strain

GenBank Accession Gene name Gene location Genbank organism Genbank taxonomy Description
LN735517 16S rRNA plastid Prasinophyceae sp. RCC999 (clade 7X-B2) Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. RCC999 (clade 7X-B2) chloroplast partial 16S rRNA gene, strain RCC 999
KT860694 18S rRNA nucleus prasinophyte sp. RCC999 (clade VIIB2) Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; prasinophyte clade VII; unclassified prasinophyte clade VII Prasinophyte sp. RCC999 (clade VIIB2) isolate ZZ034211 18S ribosomal RNA gene, partial sequence
KU843587 18S rRNA nucleus prasinophyte sp. RCC999 (clade VIIB2) Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; prasinophyte clade VII; unclassified prasinophyte clade VII Prasinophyte sp. RCC999 (clade VIIB2) 18S ribosomal RNA gene, partial sequence
MF077505 ITS rRNA nucleus prasinophyte sp. RCC999 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; prasinophyte clade VII; unclassified prasinophyte clade VII Prasinophyte sp. RCC999 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence
MK085990 Genome plastid Chloroparvula sp. RCC999 Eukaryota; Viridiplantae; Chlorophyta; Chloropicophyceae; Chloropicales; Chloropicaceae; Chloroparvula; unclassified Chloroparvula Chloroparvula sp. RCC999 culture RCC:999 chloroplast, complete genome
MK086002 Genome mitochondrion Chloroparvula sp. RCC999 Eukaryota; Viridiplantae; Chlorophyta; Chloropicophyceae; Chloropicales; Chloropicaceae; Chloroparvula; unclassified Chloroparvula Chloroparvula sp. RCC999 culture RCC:999 mitochondrion, complete genome
ERR3497238 Transcriptome Chloroparvula cf. pacifica RCC999

Associated references

Displaying 1 - 3 of 3
Santos ALopes dos, Gourvil P, Tragin M, Noël M-H, Decelle J, Romac S, Vaulot D.  2017.  Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. The ISME Journal. 11:512–528. PDF icon Download pdf (2.6 MB)
Turmel M, Santos ALopes dos, Otis C, Sergerie R, Lemieux C.  2019.  Tracing the evolution of the plastome and mitogenome in the chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biology and Evolution. in press
Santos ALopes dos, Pollina T, Gourvil P, Corre E, Marie D, Garrido JLuis, Rodríguez F, Noël M-H, Vaulot D, Eikrem W.  2017.  Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Scientific Reports. 7:14019. PDF icon Download pdf (4.58 MB)