RCC2382

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade IIa
Strain name: 
RS9907 Clonal
Strain name synonyms: 
RS9907
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Indian Ocean
Sampling regional sea: 
Red Sea
Sampling site: 
Gulf of Aqaba
Sampling country: 
Israel
Sampling ecosystem: 
pelagic
Sampling depth (m): 
10
Sampling date: 
Monday, August 23, 1999
Isolation by: 
Fuller N.
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
80
Phenotype pigment: 
Syn type 3a
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, December 7, 2010
Mother strain: 
RCC546
Sampling by: 
Fuller N.
Deposit to RCC date: 
Tuesday, December 7, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Tuesday, December 7, 2010
Purification by: 
Christophe Six
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854211 rplR Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L18 (rplR) gene, complete cds
KY854227 rpsU Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854808 rplE Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L5 (rplE) gene, complete cds
KY855304 rpsT Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854212 rplT Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L20 (rplT) gene, complete cds
KY854343 rplO Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L15 (rplO) gene, complete cds
KY854839 rplX Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L24 (rplX) gene, complete cds
KY855335 rpmA Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854213 rplV Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L22 (rplV) gene, complete cds
KY854374 rpsF Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854870 rplN Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L14 (rplN) gene, complete cds
KY855366 ycf65 Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854214 rpmB Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854405 rplI Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L9 (rplI) gene, complete cds
KY854901 rplP Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L16 (rplP) gene, complete cds
KY860815 desC3 Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854215 rpmE Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854436 rplK Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L11 (rplK) gene, complete cds
KY854932 rpsC Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860861 desA2 Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854216 rmpF Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854467 rplA Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L1 (rplA) gene, complete cds
KY854963 rplB Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L2 (rplB) gene, complete cds
MG014399 apcA Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 allophycocyanin alpha chain (apcA) gene, complete cds
KY854217 rmpG Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854498 rplJ Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854994 rplW Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L23 (rplW) gene, complete cds
MG014430 ApcB Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 allophycocyanin beta chain (apcB) gene, complete cds
KY854218 rpmH Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854529 rplL Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855025 rplD Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L4 (rplD) gene, complete cds
MG014461 apcD Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854219 rpmI Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854560 rpsJ Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855056 rplC Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L3 (rplC) gene, complete cds
MG014492 apcF Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY854220 rmpJ Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854591 rpsG Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855087 rpsA1 Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014527 cpeF Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KY854221 rpsK Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854622 rpsI Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855118 rplS Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L19 (rplS) gene, complete cds
MG014540 cpeY Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KF528775 cpeB Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9907 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854222 rpsL Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854653 rplM Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L13 (rplM) gene, complete cds
KY855149 rpsA2 Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014565 mpeB Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF528813 rpcB Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9907 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854223 rpsN Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854684 rpsM Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855180 rpsD Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014589 mpeY Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KT955727 mpeA Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9907 C-phycoerythrin class II alpha chain (mpeA) gene, complete cds
KY854224 rpsO Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854715 rpsE Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855211 rpsP Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S16 (rpsP) gene, complete cds
CP047944 Genome Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. RS9907 chromosome, complete genome
KT955717 mpeB Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9907 C-phycoerythrin class II beta chain (mpeB) gene, complete cds
KY854225 rpsQ Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854746 rplF Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L6 (rplF) gene, complete cds
KY855242 rpsR Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S18 (rpsR) gene, complete cds
KY854210 rplQ Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854226 rpsS Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854777 rpsH Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855273 rpsB Synechococcus sp. RS9907 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9907 30S ribosomal protein S2 (rpsB) gene, complete cds

Associated references

Displaying 1 - 6 of 6
Pittera J, Partensky F, Six C.  2017.  Adaptive thermostability of light-harvesting complexes in marine picocyanobacteria. The ISME Journal. 11:112–124. PDF icon Download pdf (2.07 MB)
Palacio AS, Cabello AMaría, García FC, Labban A, Morán XAnxelu G, Garczarek L, Alonso-Sáez L, López-Urrutia Á.  2020.  Changes in population age-structure obscure the temperature-size rule in marine cyanobacteria. Frontiers in Microbiology. 11:2059. PDF icon Download pdf (1.72 MB)
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.
Six C, Ratin M, Marie D, Corre E.  2021.  Marine Synechococcus picocyanobacteria: Light utilization across latitudes. Proceedings of the National Academy of Sciences. 118 PDF icon Download pdf (1.31 MB), PDF icon Download pdf (1.15 MB)