RCC2006

Pseudo-nitzschia_cf_granii

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IDENTITY

Pseudo-nitzschia_cf_granii

Domain: 
Eukaryota
Division: 
Heterokontophyta
Class: 
Bacillariophyceae
Order: 
Bacillariales
Family: 
Bacillariaceae
Genus: 
Pseudo-nitzschia
Strain name: 
MALINA E18 PG2
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
Lost date: 
Thursday, March 14, 2013
MORPHOLOGY
Cell assemblage: 
chains
Cell shape: 
elongated
Length: 
20.00
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling regional sea: 
North East Pacific
Sampling country: 
USA
Sampling ecosystem: 
pelagic
Sampling cruise: 
MALINA
Sampling station: 
PAC080709A
Sampling depth (m): 
5
Sampling date: 
Wednesday, July 8, 2009
Isolation by: 
Gourvil P.
Isolation method: 
micropipette
CULTURE CONDITIONS
RCC medium: 
RCC temperature: 
4.00
RCC transfer period weeks: 
3.00
RCC light: 
100
Remark: 
This strain does not seem to be toxic with a domoic acid production inferior to detection limit of Elisa test (data provided by R. Siano, IFREMER Brest).
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Wednesday, April 21, 2010
Identification method: 
sequence
Sampling by: 
Vaulot D.
Isolation preculture number: 
E18
Isolation growth temperature: 
4.00
Isolation medium: 
K+Si
Isolation light: 
100

Sequences available for this RCC strain

GenBank Accession Gene name Gene location Genbank organism Genbank taxonomy Description
JQ995420 28S rRNA nucleus Pseudo-nitzschia granii Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Pseudo-nitzschia Pseudo-nitzschia granii strain RCC2006 28S ribosomal RNA gene, partial sequence
LN735320 16S rRNA plastid Pseudo-nitzschia sp. RCC2006 Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Pseudo-nitzschia; unclassified Pseudo-nitzschia Pseudo-nitzschia sp. RCC2006 chloroplast partial 16S rRNA gene, strain RCC 2006
KT861176 18S rRNA nucleus Pseudo-nitzschia cf. granii Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Pseudo-nitzschia Pseudo-nitzschia cf. granii strain RCC2006 isolate ZZ0044440 18S ribosomal RNA gene, partial sequence
KT948062 ITS rRNA nucleus Pseudo-nitzschia granii Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Pseudo-nitzschia Pseudo-nitzschia granii culture-collection RCC:2006 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence